Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 36 gene models in this family



Gene modelDescriptionDomains
AT1G07520.1 scarecrow transcription factor family protein GRAS
AT1G07530.1 scarecrow-like transcription factor 14 (SCL14) GRAS
AT1G14920.1 GAI (GA INSENSITIVE); transcription factor GRAS
AT1G21450.1 SCL1 (SCARECROW-LIKE 1); transcription factor GRAS
AT1G50420.1 SCL3 (SCARECROW-LIKE 3); transcription factor GRAS
AT1G50600.1 SCL5; transcription factor GRAS
AT1G55580.1 LAS (LATERAL SUPPRESSOR); transcription factor GRAS
AT1G63100.1 scarecrow transcription factor family protein GRAS
AT1G66350.1 RGL1 (RGA-LIKE 1); transcription factor GRAS
AT2G01570.1 RGA1 (REPRESSOR OF GA1-3 1); transcription factor GRAS
AT2G04890.1 SCL21 (SCARECROW-LIKE 21); transcription factor GRAS
AT2G29060.1 scarecrow transcription factor family protein GRAS
AT2G37650.1 scarecrow-like transcription factor 9 (SCL9) GRAS
AT2G45160.1 scarecrow transcription factor family protein GRAS
AT3G03450.1 RGL2 (RGA-LIKE 2); transcription factor GRAS
AT3G13840.1 scarecrow transcription factor family protein GRAS
AT3G46600.1 scarecrow transcription factor family protein GRAS
AT3G46600.2 scarecrow transcription factor family protein GRAS
AT3G46600.3 scarecrow transcription factor family protein GRAS
AT3G49950.1 scarecrow transcription factor family protein GRAS
AT3G50650.1 scarecrow-like transcription factor 7 (SCL7) GRAS
AT3G54220.1 SCR (SCARECROW); transcription factor GRAS
AT3G60630.1 scarecrow transcription factor family protein GRAS
AT4G00150.1 scarecrow-like transcription factor 6 (SCL6) GRAS
AT4G08250.1 scarecrow transcription factor family protein GRAS
AT4G17230.1 SCL13 (SCARECROW-LIKE 13); transcription factor GRAS
AT4G36710.1 scarecrow transcription factor family protein GRAS
AT4G37650.1 SHR (SHORT ROOT); transcription factor GRAS
AT5G17490.1 RGL3 (RGA-LIKE 3); transcription factor GRAS
AT5G41920.1 scarecrow transcription factor family protein GRAS
AT5G48150.1 PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor GRAS
AT5G48150.2 PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1); transcription factor GRAS
AT5G52510.1 scarecrow-like transcription factor 8 (SCL8) GRAS
AT5G59450.1 scarecrow-like transcription factor 11 (SCL11) GRAS
AT5G66770.1 scarecrow transcription factor family protein GRAS
AT5G67411.1 similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G49950.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62656.1); contains InterPro domain GRAS transcription factor (InterPro:IPR005202) GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311

Specific references

Lee, MH; Kim, B; Song, SK; Heo, JO; Yu, NI; Lee, SA; Kim, M; Kim, DG; Sohn, SO; Lim, CE; Chang, KS; Lee, MM; Lim, J. 2008. Large-scale analysis of the GRAS gene family in Arabidopsis thaliana. Plant Mol. Biol. 67(6):659-70 PUBMEDID:18500650
Pysh, LD; Wysocka-Diller, JW; Camilleri, C; Bouchez, D; Benfey, PN. 1999. The GRAS gene family in Arabidopsis: sequence characterization and basic expression analysis of the SCARECROW-LIKE genes. Plant J. 18(1):111-9 PUBMEDID:10341448
Tian, C; Wan, P; Sun, S; Li, J; Chen, M. 2004. Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol. 54(4):519-32 PUBMEDID:15316287