Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 65 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g45860.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os01g62460.1 ZOS1-16 - C2H2 zinc finger protein, expressed GRAS
LOC_Os01g62460.2 ZOS1-16 - C2H2 zinc finger protein, expressed GRAS
LOC_Os01g62460.3 ZOS1-16 - C2H2 zinc finger protein, expressed GRAS
LOC_Os01g65900.1 chitin-inducible gibberellin-responsive protein, putative, expressed GRAS
LOC_Os01g67650.1 gibberellin response modulator protein, putative GRAS
LOC_Os01g67670.1 gibberellin response modulator protein, putative GRAS
LOC_Os01g71970.1 GRAS family transcription factor containing protein, expressed GRAS
LOC_Os02g10360.1 MONOCULM 1, putative GRAS
LOC_Os02g44360.1 scarecrow transcription factor family protein, putative, expressed GRAS
LOC_Os02g44370.1 scarecrow, putative, expressed GRAS
LOC_Os02g45760.1 chitin-inducible gibberellin-responsive protein 2, putative, expressed GRAS
LOC_Os03g09280.1 gibberellin response modulator protein, putative, expressed GRAS
LOC_Os03g09280.2 gibberellin response modulator protein, putative, expressed GRAS
LOC_Os03g09280.3 gibberellin response modulator protein, putative, expressed GRAS
LOC_Os03g15680.1 nodulation-signaling pathway 2 protein, putative GRAS
LOC_Os03g29480.1 nodulation-signaling pathway 1 protein, putative, expressed GRAS
LOC_Os03g31880.1 SHORT-ROOT, putative, expressed GRAS
LOC_Os03g40080.1 GRAS family transcription factor containing protein, expressed GRAS
LOC_Os03g48450.1 SCARECROW, putative, expressed GRAS
LOC_Os03g48450.2 SCARECROW, putative, expressed GRAS
LOC_Os03g48450.3 SCARECROW, putative, expressed GRAS
LOC_Os03g48450.4 SCARECROW, putative, expressed GRAS
LOC_Os03g49990.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os03g51330.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os04g35250.1 MONOCULM 1, putative GRAS
LOC_Os04g46860.1 scarecrow, putative, expressed GRAS
LOC_Os04g49110.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os04g50060.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os04g50060.2 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os05g31380.1 GRAS family transcription factor containing protein GRAS
LOC_Os05g31420.1 GRAS family transcription factor containing protein GRAS
LOC_Os05g40710.1 DELLA protein GAI, putative GRAS
LOC_Os05g42130.1 MONOCULM 1, putative, expressed GRAS
LOC_Os05g49930.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os06g01620.1 scarecrow, putative, expressed GRAS
LOC_Os06g03710.1 DELLA protein SLR1, putative, expressed GRAS
LOC_Os06g10900.1 DELLA protein RGL3, putative GRAS
LOC_Os06g40780.1 MONOCULM 1, putative, expressed GRAS
LOC_Os07g36170.1 chitin-inducible gibberellin-responsive protein, putative, expressed GRAS
LOC_Os07g36170.2 chitin-inducible gibberellin-responsive protein, putative, expressed GRAS
LOC_Os07g38030.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os07g39470.1 gibberellin response modulator protein, putative, expressed GRAS
LOC_Os07g39820.1 SHR, putative, expressed GRAS
LOC_Os07g40020.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os10g22430.1 gibberellin response modulator protein, putative, expressed GRAS
LOC_Os10g40390.1 scarecrow, putative GRAS
LOC_Os11g03110.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os11g04400.1 GRAS family transcription factor containing protein GRAS
LOC_Os11g04570.1 GRAS family transcription factor containing protein, expressed GRAS
LOC_Os11g04590.1 GRAS family transcription factor containing protein GRAS
LOC_Os11g06180.1 nodulation-signaling pathway 2 protein, putative GRAS
LOC_Os11g11600.1 conserved hypothetical protein GRAS
LOC_Os11g31100.1 gibberellin response modulator protein, putative GRAS
LOC_Os11g47870.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os11g47890.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os11g47900.1 SCARECROW, putative, expressed GRAS
LOC_Os11g47910.1 SCARECROW, putative GRAS
LOC_Os11g47920.1 SCARECROW, putative GRAS
LOC_Os12g02870.1 GRAS family transcription factor domain containing protein, expressed GRAS
LOC_Os12g04200.1 GRAS family transcription factor containing protein GRAS
LOC_Os12g04370.1 GRAS family transcription factor containing protein, expressed GRAS
LOC_Os12g04380.1 GRAS family transcription factor containing protein GRAS
LOC_Os12g06540.1 GRAS family transcription factor containing protein GRAS
LOC_Os12g38490.1 SCARECROW, putative, expressed GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311

Specific references

Itoh, H; Shimada, A; Ueguchi-Tanaka, M; Kamiya, N; Hasegawa, Y; Ashikari, M; Matsuoka, M. 2005. Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice. Plant J. 44(4):669-79 PUBMEDID:16262715
Tian, C; Wan, P; Sun, S; Li, J; Chen, M. 2004. Genome-wide analysis of the GRAS gene family in rice and Arabidopsis. Plant Mol. Biol. 54(4):519-32 PUBMEDID:15316287