Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 39 gene models in this family



Gene modelDescriptionDomains
105427 estExt_fgenesh1_pm.C_360012 GRAS
106581 estExt_fgenesh1_pm.C_840044 GRAS
116740 e_gw1.17.67.1 GRAS
120059 e_gw1.31.112.1 GRAS
128742 e_gw1.72.80.1 GRAS
13874 gw1.63.29.1 GRAS
141663 e_gw1.181.25.1 GRAS
143602 e_gw1.205.10.1 GRAS
144279 e_gw1.213.79.1 GRAS
146151 e_gw1.240.18.1 GRAS
14911 gw1.97.58.1 GRAS
150526 e_gw1.318.16.1 GRAS
150910 e_gw1.324.29.1 GRAS
152304 e_gw1.359.29.1 GRAS
176868 estExt_gwp_gw1.C_200045 GRAS
178496 estExt_gwp_gw1.C_310026 GRAS
183191 estExt_gwp_gw1.C_630108 GRAS
185085 estExt_gwp_gw1.C_800022 GRAS
185544 estExt_gwp_gw1.C_840072 GRAS
189179 estExt_gwp_gw1.C_1300022 GRAS
189182 estExt_gwp_gw1.C_1300025 GRAS
189213 estExt_gwp_gw1.C_1300064 GRAS
190339 estExt_gwp_gw1.C_1440090 GRAS
199287 estExt_gwp_gw1.C_3620015 GRAS
200712 estExt_gwp_gw1.C_4560001 GRAS
202910 estExt_Genewise1.C_120199 GRAS
218924 estExt_Genewise1.C_1650063 GRAS
22273 gw1.882.3.1 GRAS
22633 gw1.1.142.1 GRAS
226424 estExt_Genewise1.C_3590028 GRAS
2626 gw1.197.14.1 GRAS
42008 gw1.85.125.1 GRAS
42906 gw1.165.95.1 GRAS
59557 fgenesh1_pm.scaffold_175000002 GRAS
60774 fgenesh1_pm.scaffold_281000007 GRAS
61285 fgenesh1_pm.scaffold_346000001 GRAS
81762 fgenesh1_pg.scaffold_98000013 GRAS
83741 fgenesh1_pg.scaffold_116000076 GRAS
83829 fgenesh1_pg.scaffold_117000073 GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311