Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 98 gene models in this family



Gene modelDescriptionDomains
172616 gw1.I.1216.1 GRAS
172620 gw1.I.1220.1 GRAS
172625 gw1.I.1225.1 GRAS
176020 gw1.I.4620.1 GRAS
177714 gw1.I.6314.1 GRAS
178600 gw1.I.7200.1 GRAS
180523 gw1.I.9123.1 GRAS
180736 gw1.I.9336.1 GRAS
203208 gw1.IX.3673.1 GRAS
203692 gw1.IX.4157.1 GRAS
203698 gw1.IX.4163.1 GRAS
203702 gw1.IX.4167.1 GRAS
205925 gw1.V.1326.1 GRAS
208019 gw1.V.3420.1 GRAS
208878 gw1.V.4279.1 GRAS
216407 gw1.VII.712.1 GRAS
216823 gw1.VII.1128.1 GRAS
219100 gw1.VII.3405.1 GRAS
227435 gw1.X.2132.1 GRAS
246964 gw1.XIV.3707.1 GRAS
249752 gw1.XIX.2152.1 GRAS
267237 gw1.127.243.1 GRAS
276697 gw1.186.21.1 GRAS
276713 gw1.1861.5.1 GRAS
282523 gw1.28.1097.1 GRAS
286263 gw1.40.23.1 GRAS
289258 gw1.44.471.1 GRAS
292228 gw1.6307.3.1 GRAS
292365 gw1.64.17.1 GRAS
292788 gw1.64.440.1 GRAS
408723 gw1.II.58.1 GRAS
409708 gw1.II.1043.1 GRAS
411207 gw1.II.2542.1 GRAS
414957 gw1.III.2060.1 GRAS
415121 gw1.III.2224.1 GRAS
417063 gw1.VI.1436.1 GRAS
417914 gw1.VI.2287.1 GRAS
424327 gw1.57.294.1 GRAS
547873 eugene3.00010314 GRAS
551373 eugene3.00020688 GRAS
552534 eugene3.00021849 GRAS
552883 eugene3.00002198 GRAS
554318 eugene3.00030951 GRAS
556123 eugene3.00040836 GRAS Peptidase_C48
556125 eugene3.00040838 GRAS
559213 eugene3.00050828 GRAS
566817 eugene3.00101375 GRAS
569054 eugene3.00111068 GRAS
569603 eugene3.00120256 GRAS
575909 eugene3.00160044 GRAS
576073 eugene3.00160208 GRAS
576075 eugene3.00160210 GRAS
576076 eugene3.00160211 GRAS
576078 eugene3.00160213 GRAS
577035 eugene3.00161170 GRAS
581012 eugene3.01250010 GRAS
586823 eugene3.02010032 GRAS
587904 eugene3.02220016 GRAS
592659 eugene3.44860001 GRAS
594603 eugene3.00640191 GRAS zf-BED
595033 eugene3.00660227 GRAS
652427 grail3.0024010601 GRAS
654429 grail3.0058011101 GRAS
711203 estExt_Genewise1_v1.C_LG_II3184 GRAS
714252 estExt_Genewise1_v1.C_LG_IV3834 GRAS
720118 estExt_Genewise1_v1.C_LG_VIII0671 GRAS
723238 estExt_Genewise1_v1.C_LG_IX4165 GRAS
726855 estExt_Genewise1_v1.C_LG_X6481 GRAS
730290 estExt_Genewise1_v1.C_LG_XIII2678 GRAS
734437 estExt_Genewise1_v1.C_LG_XVI0556 GRAS
752140 fgenesh4_pg.C_LG_I001743 GRAS
752763 fgenesh4_pg.C_LG_I002366 GRAS
754607 fgenesh4_pg.C_LG_II000787 GRAS
761029 fgenesh4_pg.C_LG_V001081 GRAS
767807 fgenesh4_pg.C_LG_IX000858 GRAS
769812 fgenesh4_pg.C_LG_X001302 GRAS
769813 fgenesh4_pg.C_LG_X001303 GRAS
769814 fgenesh4_pg.C_LG_X001304 GRAS
769815 fgenesh4_pg.C_LG_X001305 GRAS
773140 fgenesh4_pg.C_LG_XII000915 GRAS
774695 fgenesh4_pg.C_LG_XIV000605 GRAS
775656 fgenesh4_pg.C_LG_XV000084 GRAS
776225 fgenesh4_pg.C_LG_XV000653 GRAS
776876 fgenesh4_pg.C_LG_XVI000118 GRAS
777888 fgenesh4_pg.C_LG_XVI001130 GRAS
781695 fgenesh4_pg.C_scaffold_41000063 GRAS
787226 fgenesh4_pg.C_scaffold_201000037 GRAS
789718 fgenesh4_pg.C_scaffold_762000003 GRAS
792756 fgenesh4_pg.C_scaffold_4649000001 GRAS
797672 fgenesh4_pm.C_LG_I000675 GRAS
799745 fgenesh4_pm.C_LG_III000210 GRAS
800203 fgenesh4_pm.C_LG_III000668 GRAS
802926 fgenesh4_pm.C_LG_VII000412 GRAS
803616 fgenesh4_pm.C_LG_VIII000571 GRAS
804557 fgenesh4_pm.C_LG_IX000604 GRAS
813485 fgenesh4_pm.C_scaffold_57000088 GRAS
818564 estExt_fgenesh4_pg.C_LG_V1044 GRAS
831148 estExt_fgenesh4_pm.C_LG_IV0241 GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311