Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 73 gene models in this family



Gene modelDescriptionDomains
123236 fgenesh1_pm.C_chr_1000290 GRAS
126484 fgenesh1_pm.C_chr_3001515 GRAS
126614 fgenesh1_pm.C_chr_3001645 GRAS
129138 fgenesh1_pm.C_chr_8000111 GRAS
3988448 gw1.10.325.1 GRAS
4119475 gw1.6.13424.1 GRAS
4121386 gw1.9.13784.1 GRAS
4130338 gw1.10.14364.1 GRAS
4131356 gw1.8.14551.1 GRAS
4139312 gw1.1.14381.1 GRAS
4157661 gw1.5.17073.1 GRAS
4158003 gw1.5.17091.1 GRAS
4167364 gw1.1.19108.1 GRAS
4740632 estExt_Genewise1.C_chr_10627 GRAS
4742236 estExt_Genewise1.C_chr_13100 GRAS
4748950 estExt_Genewise1.C_chr_29056 GRAS
4749156 estExt_Genewise1.C_chr_29374 GRAS
4757829 estExt_Genewise1.C_chr_48442 GRAS
4760191 estExt_Genewise1.C_chr_57460 GRAS
4760205 estExt_Genewise1.C_chr_57478 GRAS
4766215 estExt_Genewise1.C_chr_85867 GRAS
4777206 e_gw1.1.3823.1 GRAS
4783108 e_gw1.1.4086.1 GRAS
4787710 e_gw1.2.20553.1 GRAS
4793181 e_gw1.2.21072.1 GRAS
4820255 e_gw1.5.17090.1 GRAS
4823377 e_gw1.5.444.1 GRAS
4844910 e_gw1.8.144.1 GRAS
4853281 e_gw1.9.15518.1 GRAS
4855947 e_gw1.9.51.1 GRAS
4856566 e_gw1.9.242.1 GRAS
4868252 estExt_Genewise1Plus.C_chr_12144 GRAS
4871442 estExt_Genewise1Plus.C_chr_110114 GRAS
4886930 estExt_Genewise1Plus.C_chr_57467 GRAS
4886932 estExt_Genewise1Plus.C_chr_57469 GRAS
4886943 estExt_Genewise1Plus.C_chr_57487 GRAS
4886947 estExt_Genewise1Plus.C_chr_57497 GRAS
4894851 estExt_Genewise1Plus.C_chr_96123 GRAS
4967577 fgenesh1_pg.C_chr_1004179 GRAS
4972359 fgenesh1_pg.C_chr_2003675 GRAS
4991480 fgenesh1_pg.C_chr_9001208 GRAS
4992164 fgenesh1_pg.C_chr_9001892 GRAS
4997733 estExt_fgenesh1_pg.C_chr_12954 GRAS
5000731 estExt_fgenesh1_pg.C_chr_23522 GRAS
5002267 estExt_fgenesh1_pg.C_chr_32335 GRAS
5003003 estExt_fgenesh1_pg.C_chr_33627 GRAS
5004718 estExt_fgenesh1_pg.C_chr_42720 GRAS
5004758 estExt_fgenesh1_pg.C_chr_42801 GRAS
5006718 estExt_fgenesh1_pg.C_chr_61794 GRAS
5006800 estExt_fgenesh1_pg.C_chr_61933 GRAS
5029785 Sb01g032800 GRAS
5030768 Sb10g001690 GRAS
5037063 Sb03g042530 GRAS
5039582 Sb05g003820 GRAS
5040348 Sb05g018070 GRAS
5041022 Sb05g026245 GRAS
5041023 Sb05g026250 GRAS
5041024 Sb05g026260 GRAS
5041025 Sb05g026270 GRAS
5041157 Sb05g027786 GRAS
5041159 Sb05g027790 GRAS
5041161 Sb05g027810 GRAS
5041163 Sb05g027830 GRAS
5044568 Sb08g003950 GRAS
5045729 Sb09g001160 GRAS
5050019 Sb01g044280 GRAS
5051800 Sb02g035680 GRAS
5051916 Sb02g037650 GRAS
5053996 Sb03g039510 GRAS
5056282 Sb05g001500 GRAS
5056886 Sb05g027750 GRAS
5057226 Sb06g017210 GRAS
5057261 Sb06g017860 GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311