Plant Transcription factor database - Universität Potsdam
version: 3.0

Selaginella moellendorffii GRAS Family

Description

Tian et al. 2004: Members of the GRAS gene family encode transcriptional regulators that have diverse functions in plant growth and development such as gibberellin signal transduction, root radial patterning, axillary meristem formation, phytochrome A signal transduction, and gametogenesis.

Members of this family
  SHOULD possess GRAS domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Bolle 2004 for A. thaliana were taken as gold standard.

The gold standard reported 33 members for this family, 32 of which are present in ArabTFDB, giving a PPV of 0.97. One additional member not present in ArabTFDB might be a false negative, giving a Sensitivity of 0.97.

This family is also present in:

References

There are 48 gene models in this family



Gene modelDescriptionDomains
102631 e_gw1.26.547.1 GRAS
102726 e_gw1.26.101.1 GRAS
106387 e_gw1.33.182.1 GRAS
113376 e_gw1.46.282.1 GRAS
113858 e_gw1.47.67.1 GRAS
122435 e_gw1.68.165.1 GRAS
122441 e_gw1.68.249.1 GRAS
12696 gw1.59.71.1 GRAS
139506 estExt_Genewise1.C_00833 GRAS
142207 estExt_Genewise1.C_40321 GRAS
149826 estExt_Genewise1.C_240620 GRAS
22445 gw1.118.60.1 GRAS
22449 gw1.85.97.1 GRAS
232175 fgenesh1_pm.C_scaffold_23000020 GRAS
24847 gw1.33.179.1 GRAS
24848 gw1.33.180.1 GRAS
24851 gw1.5.338.1 GRAS
32919 gw1.40.275.1 GRAS
33543 gw1.18.398.1 GRAS
36301 gw1.3.814.1 GRAS
406689 fgenesh2_pg.C_scaffold_5000570 GRAS
406691 fgenesh2_pg.C_scaffold_5000572 GRAS
406693 fgenesh2_pg.C_scaffold_5000574 GRAS
424843 fgenesh2_pg.C_scaffold_70000074 GRAS
444260 estExt_fgenesh2_pg.C_420004 GRAS
53339 gw1.22.391.1 GRAS
56382 gw1.32.385.1 GRAS
64241 gw1.3.1225.1 GRAS
64559 gw1.5.1057.1 GRAS
64588 gw1.4.1269.1 GRAS
70744 gw1.0.2275.1 GRAS
74492 e_gw1.0.2074.1 GRAS
74605 e_gw1.0.2543.1 GRAS
77165 e_gw1.1.815.1 GRAS
80549 e_gw1.3.432.1 GRAS
82663 e_gw1.5.339.1 GRAS
83123 e_gw1.5.386.1 GRAS
83267 e_gw1.5.385.1 GRAS
83811 e_gw1.6.612.1 GRAS
83927 e_gw1.6.238.1 GRAS
84560 e_gw1.6.300.1 GRAS
84762 e_gw1.6.918.1 GRAS
84991 e_gw1.6.307.1 GRAS
85562 e_gw1.7.387.1 GRAS
88625 e_gw1.9.362.1 GRAS
88990 e_gw1.9.449.1 GRAS
90295 e_gw1.11.24.1 GRAS
96442 e_gw1.18.138.1 GRAS

General references

Bolle, C. 2004. The role of GRAS proteins in plant signal transduction and development. Planta 218(5):683-92 PUBMEDID:14760535
Richards, DE; Peng, J; Harberd, NP. 2000. Plant GRAS and metazoan STATs: one family? Bioessays 22(6):573-7 PUBMEDID:10842311