Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica HB Family

Description

Kappen. 2000: The homeodomain is a DNA-binding motif within transcription factor proteins. These transcription factors may be involved in cell differentiation and control of cell growth, as well as patterning of diverse organisms.

Members of this family
  SHOULD possess Homeobox KNOX1 KNOX2 domains

Domain alignments

This family is also present in:

References

There are 97 gene models in this family



Gene modelDescriptionDomains
OsIBCD000643 Chr01_961,2661,,,1,2661, Homeobox MEKHLA START
OsIBCD001323 Chr01_1940,510,,,1,510, KNOX1 KNOX2
OsIBCD001324 Chr01_1941,435,,,1,435, ELK Homeobox
OsIBCD002710 Chr01_4286,687,,,1,687, HALZ Homeobox
OsIBCD002846 Chr01_4493,1602,,,1,1602, Homeobox
OsIBCD002871 Chr01_4525,894,,,1,894, Homeobox
OsIBCD003560 Chr01_5495,2097,,,1,2097, Homeobox START
OsIBCD003712 Chr01_5715,753,,,1,753, Homeobox
OsIBCD003837 Chr01_5904,942,,,1,942, Homeobox
OsIBCD003884 Chr01_5977,1839,,,1,1839, Homeobox POX
OsIBCD003918 Chr01_6034,603,,,1,603, Homeobox
OsIBCD004305 Chr01_6597,3723,,,1,3723, Glycos_transf_1 Homeobox S6PP
OsIBCD004419 Chr01_6743,3684,,,1,3684, Homeobox
OsIBCD005074 Chr02_518,747,,,1,747, HALZ Homeobox
OsIBCD005290 Chr02_852,675,,,1,675, KNOX1
OsIBCD005291 Chr02_853,840,,,1,840, ELK KNOX1
OsIBCD005588 Chr02_1244,1737,,,1,1737, Homeobox POX
OsIBCD006900 Chr02_3547,1050,,,1,1050, HALZ Homeobox
OsIBCD007414 Chr02_4308,789,,,1,789, HALZ Homeobox
OsIBCD007536 Chr02_4496,2415,,,1,2415, Homeobox START
OsIBCD007852 Chr02_4958,1038,,,1,1038, HALZ Homeobox
OsIBCD008599 Chr03_109,2574,,,1,2574, Homeobox MEKHLA START
OsIBCD008688 Chr03_220,465,,,1,465, KNOX1 KNOX2
OsIBCD008692 Chr03_226,1776,,,1,1776, Homeobox POX
OsIBCD008972 Chr03_626,2115,,,1,2115, Homeobox POX
OsIBCD009008 Chr03_670,1155,,,1,1155, HALZ Homeobox
OsIBCD009110 Chr03_808,1017,,,1,1017, HALZ Homeobox
OsIBCD009176 Chr03_896,720,,,1,720, Homeobox
OsIBCD009369 Chr03_1153,879,,,1,879, HALZ Homeobox
OsIBCD009992 Chr03_2037,987,,,1,987, Homeobox
OsIBCD011371 Chr03_4432,2580,,,1,2580, Homeobox MEKHLA START
OsIBCD011532 Chr03_4702,468,,,1,468, ELK Homeobox
OsIBCD011533 Chr03_4703,504,,,1,504, KNOX1 KNOX2
OsIBCD011535 Chr03_4708,585,,,1,585, KNOX1 KNOX2
OsIBCD011536 Chr03_4710,1011,,,1,1011, Homeobox KNOX1 KNOX2
OsIBCD011586 Chr03_4790,1038,,,1,1038, Homeobox POX
OsIBCD011587 Chr03_4791,1929,,,1,1929, Homeobox POX
OsIBCD011860 Chr03_5209,585,,,1,585, KNOX2
OsIBCD011862 Chr03_5212,1044,,,1,1044, ELK Homeobox KNOX2
OsIBCD011887 Chr03_5246,2412,,,1,2412, Homeobox POX
OsIBCD012092 Chr03_5531,1377,,,1,1377, Homeobox
OsIBCD012101 Chr03_5542,1164,,,1,1164, ELK KNOX1 KNOX2
OsIBCD012103 Chr03_5545,1074,,,1,1074, ELK Homeobox KNOX1 KNOX2
OsIBCD015133 Chr04_3931,789,,,1,789, HALZ Homeobox
OsIBCD015173 Chr04_3991,744,,,1,744, HALZ Homeobox
OsIBCD015292 Chr04_4165,2532,,,1,2532, Homeobox START
OsIBCD015672 Chr04_4711,489,,,1,489, Homeobox
OsIBCD015676 Chr04_4715,2346,,,1,2346, Homeobox START
OsIBCD015818 Chr04_4910,711,,,1,711, Homeobox
OsIBCD015910 Chr04_5027,858,,,1,858, Homeobox
OsIBCD016254 Chr05_166,861,,,1,861, Homeobox
OsIBCD016329 Chr05_282,501,,,1,501, KNOX1 KNOX2
OsIBCD016705 Chr05_871,2307,,,1,2307, Homeobox
OsIBCD017485 Chr05_2369,627,,,1,627, Homeobox
OsIBCD018230 Chr05_3545,1803,,,1,1803, Homeobox POX
OsIBCD018893 Chr05_4511,1548,,,1,1548, Homeobox
OsIBCD018977 Chr05_4640,672,,,1,672, HALZ Homeobox
OsIBCD019157 Chr06_91,1059,,,1,1059, Homeobox POX
OsIBCD019337 Chr06_381,771,,,1,771, HALZ Homeobox
OsIBCD019339 Chr06_383,927,,,1,927, HALZ Homeobox
OsIBCD019679 Chr06_863,1317,,,1,1317, Homeobox
OsIBCD019777 Chr06_1020,1842,,,1,1842, Homeobox START
OsIBCD019910 Chr06_1218,2448,,,1,2448, Homeobox PHD
OsIBCD021080 Chr06_3361,1848,,,1,1848, Homeobox POX
OsIBCD021295 Chr06_3690,1416,,,1,1416, Homeobox
OsIBCD021586 Chr06_4123,972,,,1,972, ELK KNOX1 KNOX2
OsIBCD021908 Chr06_4607,771,,,1,771, HALZ Homeobox
OsIBCD022256 Chr07_258,1068,,,1,1068, ELK Homeobox KNOX1 KNOX2
OsIBCD023198 Chr07_1969,552,,,1,552, Homeobox
OsIBCD024010 Chr07_3271,735,,,1,735, Homeobox
OsIBCD024219 Chr07_3591,3201,,,1,3201, Homeobox
OsIBCD024635 Chr07_4179,789,,,1,789, Homeobox
OsIBCD024923 Chr08_320,2358,,,1,2358, Homeobox START
OsIBCD025196 Chr08_767,2397,,,1,2397, Homeobox START
OsIBCD025553 Chr08_1374,855,,,1,855, Homeobox
OsIBCD025862 Chr08_1947,2373,,,1,2373, Homeobox START
OsIBCD026508 Chr08_3152,1053,,,1,1053, HALZ Homeobox
OsIBCD026775 Chr08_3581,1059,,,1,1059, HALZ Homeobox
OsIBCD026878 Chr08_3759,741,,,1,741, HALZ Homeobox
OsIBCD028360 Chr09_1688,1029,,,1,1029, HALZ Homeobox
OsIBCD028731 Chr09_2256,831,,,1,831, HALZ Homeobox
OsIBCD028858 Chr09_2465,792,,,1,792, HALZ Homeobox
OsIBCD029171 Chr09_2917,2346,,,1,2346, Homeobox START
OsIBCD029183 Chr09_2932,606,,,1,606, Homeobox
OsIBCD029487 Chr10_18,771,,,1,771, HALZ Homeobox
OsIBCD030352 Chr10_1572,906,,,1,906, HALZ Homeobox
OsIBCD030516 Chr10_1853,1056,,,1,1056, HALZ Homeobox
OsIBCD030982 Chr10_2567,2472,,,1,2472, Homeobox MEKHLA START
OsIBCD031312 Chr10_3053,1764,,,1,1764, Homeobox POX
OsIBCD031470 Chr10_3279,936,,,1,936, HALZ HD-ZIP_N Homeobox
OsIBCD031555 Chr10_3405,2601,,,1,2601, Homeobox START
OsIBCD031908 Chr11_486,1263,,,1,1263, Homeobox POX
OsIBCD034111 Chr12_553,1965,,,1,1965, Homeobox POX
OsIBCD035649 Chr12_3144,2697,,,1,2697, Homeobox MEKHLA START
OsIBCD035776 Chr12_3330,1944,,,1,1944, Homeobox POX
OsIBCD039404 Chr03_5210,408,,,1,408, KNOX1
OsIBCD046327 Chr12_12,612,,,1,612, Homeobox

General references

Bharathan, G; Janssen, BJ; Kellogg, EA; Sinha, N. 1997. Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? Proc. Natl. Acad. Sci. U.S.A. 94(25):13749-53 PUBMEDID:9391098
Chan, RL; Gago, GM; Palena, CM; Gonzalez, DH. 1998. Homeoboxes in plant development. Biochim. Biophys. Acta 1442(1):1-19 PUBMEDID:9767075
Kappen, C. 2000. The homeodomain: an ancient evolutionary motif in animals and plants. Comput. Chem. 24(1):95-103 PUBMEDID:10642882
Scott, MP; Tamkun, JW; Hartzell, GW. 1989. The structure and function of the homeodomain. Biochim. Biophys. Acta 989(1):25-48 PUBMEDID:2568852