Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica HB Family

Description

Kappen. 2000: The homeodomain is a DNA-binding motif within transcription factor proteins. These transcription factors may be involved in cell differentiation and control of cell growth, as well as patterning of diverse organisms.

Members of this family
  SHOULD possess Homeobox KNOX1 KNOX2 domains

Domain alignments

This family is also present in:

References

There are 140 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g19694.1 Homeobox domain containing protein, expressed ELK Homeobox KNOX1 KNOX2
LOC_Os01g45570.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os01g47710.1 homeobox domain containing protein, expressed Homeobox
LOC_Os01g48170.1 homeobox domain containing protein Homeobox
LOC_Os01g55549.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os01g57890.1 Homeobox domain containing protein, expressed Homeobox START
LOC_Os01g57890.2 Homeobox domain containing protein, expressed Homeobox START
LOC_Os01g60270.1 homeobox domain containing protein, expressed Homeobox
LOC_Os01g60270.2 homeobox domain containing protein, expressed Homeobox
LOC_Os01g62310.1 homeobox domain containing protein, expressed Homeobox
LOC_Os01g62920.1 homeodomain protein, putative, expressed Homeobox POX
LOC_Os01g63510.1 homeobox domain containing protein, expressed Homeobox
LOC_Os01g70810.1 homeobox domain containing protein, expressed Homeobox
LOC_Os02g05450.1 Homeobox domain containing protein, expressed Homeobox PHD
LOC_Os02g05640.1 homeobox associated leucine zipper, putative HALZ Homeobox
LOC_Os02g08544.1 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os02g08544.2 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os02g13310.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os02g35770.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os02g43330.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os02g45250.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os02g49700.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os02g49700.2 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os02g49700.3 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os03g01890.1 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os03g01890.2 START domain containing protein, expressed Homeobox START
LOC_Os03g03164.1 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os03g03164.2 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os03g03164.3 homeobox protein knotted-1, putative, expressed ELK KNOX2
LOC_Os03g03260.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os03g06930.1 homeodomain protein, putative, expressed Homeobox POX
LOC_Os03g07450.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os03g08960.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os03g10210.1 homeobox domain containing protein, expressed Homeobox
LOC_Os03g12860.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os03g20910.1 homeobox domain containing protein, expressed Homeobox
LOC_Os03g20910.2 homeobox domain containing protein, expressed Homeobox
LOC_Os03g43930.1 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os03g43930.2 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os03g47016.1 homeobox protein knotted-1-like 10, putative, expressed ELK Homeobox
LOC_Os03g47022.1 homeobox protein rough sheath 1, putative KNOX1 KNOX2
LOC_Os03g47036.1 homeotic protein knotted-1, putative ELK Homeobox
LOC_Os03g47042.1 homeobox protein rough sheath 1, putative KNOX1 KNOX2
LOC_Os03g47730.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os03g47740.1 homeodomain protein, putative, expressed Homeobox POX
LOC_Os03g47740.2 homeodomain protein, putative, expressed Homeobox POX
LOC_Os03g47740.3 homeodomain protein, putative, expressed Homeobox POX
LOC_Os03g51690.1 Homeobox domain containing protein, expressed ELK Homeobox KNOX1 KNOX2
LOC_Os03g51690.2 Homeobox domain containing protein, expressed ELK Homeobox KNOX1 KNOX2
LOC_Os03g51690.3 Homeobox domain containing protein, expressed ELK Homeobox KNOX2
LOC_Os03g51710.1 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os03g51710.2 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os03g52239.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os03g52239.2 homeobox domain containing protein, expressed Homeobox POX
LOC_Os03g52239.3 homeobox domain containing protein, expressed Homeobox POX
LOC_Os03g55990.1 homeobox domain containing protein, expressed Homeobox
LOC_Os03g55990.2 homeobox domain containing protein, expressed Homeobox
LOC_Os03g55990.3 homeobox domain containing protein, expressed Homeobox
LOC_Os03g56110.1 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os03g56110.2 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os03g56140.1 homeobox protein rough sheath 1, putative, expressed ELK KNOX1
LOC_Os03g56140.2 homeobox protein rough sheath 1, putative, expressed ELK Homeobox KNOX1
LOC_Os04g45810.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os04g46350.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os04g48070.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g48070.2 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g48070.3 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g53540.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g53540.2 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g53540.3 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g53540.4 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os04g55590.1 homeobox domain containing protein, expressed Homeobox
LOC_Os04g56780.1 homeobox domain containing protein, expressed Homeobox
LOC_Os05g02730.1 homeobox domain containing protein, expressed Homeobox
LOC_Os05g03884.1 homeobox protein knotted-1-like 6, putative, expressed ELK Homeobox KNOX1 KNOX2
LOC_Os05g09630.1 homeobox domain containing protein, expressed Homeobox
LOC_Os05g09630.2 homeobox domain containing protein, expressed Homeobox
LOC_Os05g25600.1 transposon protein, putative, unclassified, expressed Homeobox PMD
LOC_Os05g38120.1 homeodomain protein, putative, expressed Homeobox POX
LOC_Os05g48820.1 DDT, putative, expressed DDT Homeobox
LOC_Os05g48990.1 homeobox domain containing protein, expressed Homeobox
LOC_Os06g01934.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os06g04850.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os06g04870.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os06g10600.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os06g12400.1 Homeobox domain containing protein, expressed Homeobox PHD
LOC_Os06g29020.1 retrotransposon protein, putative, unclassified, expressed Homeobox
LOC_Os06g29020.2 retrotransposon protein, putative, unclassified, expressed Homeobox
LOC_Os06g36680.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os06g39906.1 homeobox domain containing protein, expressed Homeobox
LOC_Os06g43860.1 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os06g43860.2 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os06g43860.3 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os06g48290.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os07g03770.1 Homeobox domain containing protein, expressed ELK Homeobox KNOX1 KNOX2
LOC_Os07g24350.1 homeobox domain containing protein Homeobox
LOC_Os07g34880.1 homeobox domain containing protein Homeobox
LOC_Os07g39320.1 homeobox domain containing protein, expressed Homeobox
LOC_Os07g48560.1 homeobox domain containing protein, expressed Homeobox
LOC_Os08g04190.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os08g08820.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os08g08820.2 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os08g14400.1 homeobox domain containing protein, expressed Homeobox
LOC_Os08g19590.1 Homeobox domain containing protein, expressed Homeobox START
LOC_Os08g19590.2 Homeobox domain containing protein, expressed Homeobox START
LOC_Os08g19590.3 Homeobox domain containing protein, expressed Homeobox START
LOC_Os08g19650.1 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os08g19650.2 homeobox protein knotted-1, putative, expressed ELK KNOX1 KNOX2
LOC_Os08g32080.1 CPuORF27 - conserved peptide uORF-containing transcript, expressed HALZ Homeobox
LOC_Os08g32085.1 expressed protein HALZ Homeobox
LOC_Os08g36220.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os08g37580.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os09g21180.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os09g27450.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os09g29460.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os09g35760.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os09g35760.2 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os09g35910.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os10g01470.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os10g23090.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os10g23090.2 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os10g26500.1 homeobox associated leucine zipper, putative, expressed HALZ Homeobox
LOC_Os10g33960.1 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os10g33960.2 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os10g33960.3 START domain containing protein, expressed Homeobox START
LOC_Os10g33960.4 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os10g39030.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os10g39720.1 homeobox domain containing protein Homeobox
LOC_Os10g41230.1 homeobox associated leucine zipper, putative, expressed HALZ HD-ZIP_N Homeobox
LOC_Os10g42490.1 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os10g42490.2 homeobox and START domains containing protein, putative, expressed Homeobox START
LOC_Os11g01130.1 homeobox domain containing protein, expressed Homeobox
LOC_Os11g01130.2 homeobox domain containing protein, expressed Homeobox
LOC_Os11g06020.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os12g01120.1 homeobox domain containing protein Homeobox
LOC_Os12g41860.1 START domain containing protein, expressed Homeobox MEKHLA START
LOC_Os12g43950.1 homeobox domain containing protein, expressed Homeobox POX
LOC_Os12g43950.2 homeobox domain containing protein, expressed Homeobox POX
LOC_Os12g43950.3 homeobox domain containing protein, expressed Homeobox POX
LOC_Os12g43950.4 homeobox domain containing protein, expressed Homeobox POX

General references

Bharathan, G; Janssen, BJ; Kellogg, EA; Sinha, N. 1997. Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? Proc. Natl. Acad. Sci. U.S.A. 94(25):13749-53 PUBMEDID:9391098
Chan, RL; Gago, GM; Palena, CM; Gonzalez, DH. 1998. Homeoboxes in plant development. Biochim. Biophys. Acta 1442(1):1-19 PUBMEDID:9767075
Kappen, C. 2000. The homeodomain: an ancient evolutionary motif in animals and plants. Comput. Chem. 24(1):95-103 PUBMEDID:10642882
Scott, MP; Tamkun, JW; Hartzell, GW. 1989. The structure and function of the homeodomain. Biochim. Biophys. Acta 989(1):25-48 PUBMEDID:2568852

Specific references

Luo, H; Song, F; Goodman, RM; Zheng, Z. 2005. Up-regulation of OsBIHD1, a rice gene encoding BELL homeodomain transcriptional factor, in disease resistance responses. Plant Biol (Stuttg) 7(5):459-68 PUBMEDID:16163610
Meijer, AH; Scarpella, E; van Dijk, EL; Qin, L; Taal, AJ; Rueb, S; Harrington, SE; McCouch, SR; Schilperoort, RA; Hoge, JH. 1997. Transcriptional repression by Oshox1, a novel homeodomain leucine zipper protein from rice. Plant J. 11(2):263-76 PUBMEDID:9076993