Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa HB Family

Description

Kappen. 2000: The homeodomain is a DNA-binding motif within transcription factor proteins. These transcription factors may be involved in cell differentiation and control of cell growth, as well as patterning of diverse organisms.

Members of this family
  SHOULD possess Homeobox KNOX1 KNOX2 domains

Domain alignments

This family is also present in:

References

There are 130 gene models in this family



Gene modelDescriptionDomains
172012 gw1.I.612.1 Homeobox POX
176327 gw1.I.4927.1 Homeobox
180608 gw1.I.9208.1 ELK KNOX1 KNOX2
195596 gw1.IV.685.1 Homeobox POX
197907 gw1.IV.2996.1 DDT Homeobox
198877 gw1.IV.3966.1 Homeobox START
203805 gw1.IX.4270.1 Homeobox
203989 gw1.IX.4454.1 HALZ Homeobox
204283 gw1.IX.4748.1 Homeobox MEKHLA START
206085 gw1.V.1486.1 Homeobox POX
206742 gw1.V.2143.1 Homeobox
208337 gw1.V.3738.1 Homeobox POX
208963 gw1.V.4364.1 HALZ Homeobox
216338 gw1.VII.643.1 DDT Homeobox
217381 gw1.VII.1686.1 HALZ Homeobox
218986 gw1.VII.3291.1 Homeobox POX
233519 gw1.XI.1499.1 ELK Homeobox KNOX1 KNOX2
235760 gw1.XI.3740.1 Homeobox
240362 gw1.XIII.611.1 ELK Homeobox KNOX1 KNOX2
243557 gw1.XIV.300.1 Homeobox
251581 gw1.XV.1017.1 Homeobox
252159 gw1.XV.1595.1 ELK Homeobox KNOX1 KNOX2
255930 gw1.XVI.1869.1 HALZ Homeobox
256272 gw1.XVI.2211.1 Homeobox POX
259053 gw1.XVII.1044.1 HALZ Homeobox
262862 gw1.XVIII.3403.1 ELK KNOX1 KNOX2
266564 gw1.124.214.1 DDT Homeobox
268795 gw1.133.237.1 ELK Homeobox KNOX1 KNOX2
271375 gw1.146.127.1 Homeobox
271823 gw1.148.81.1 HALZ Homeobox
276838 gw1.187.73.1 Homeobox
279158 gw1.21516.1.1 Homeobox
282390 gw1.28.964.1 Homeobox
286586 gw1.40.346.1 HALZ Homeobox
289365 gw1.44.578.1 Homeobox START
415338 gw1.III.2441.1 Homeobox
415411 gw1.III.2514.1 Homeobox START
417478 gw1.VI.1851.1 ELK KNOX1 KNOX2
418988 gw1.VIII.416.1 ELK Homeobox KNOX1 KNOX2
421391 gw1.VIII.2819.1 HALZ Homeobox
421565 gw1.XII.25.1 Homeobox
422480 gw1.XII.940.1 Homeobox
422892 gw1.XII.1352.1 ELK Homeobox KNOX1 KNOX2
548258 eugene3.00010699 HALZ Homeobox
552123 eugene3.00021438 Homeobox START
555728 eugene3.00040441 Homeobox
557679 eugene3.00090939 Homeobox
558279 eugene3.00091539 Homeobox POX
560666 eugene3.00060625 Homeobox PHD
561871 eugene3.00061830 Homeobox
565244 eugene3.00081839 HALZ Homeobox
566499 eugene3.00101057 HALZ Homeobox
568199 eugene3.00110213 Homeobox START
571283 eugene3.00130647 Homeobox
571284 eugene3.00130648 Homeobox
572441 eugene3.00140486 HALZ Homeobox
573159 eugene3.00141204 DDT Homeobox
575800 eugene3.00151195 Homeobox START
578968 eugene3.00181192 HALZ Homeobox
584428 eugene3.163820001 Homeobox
589889 eugene3.00290072 HALZ HD-ZIP_N Homeobox
591580 eugene3.04030001 Homeobox START
594622 eugene3.00640210 Homeobox
594629 eugene3.00640217 DDT Homeobox
595088 eugene3.00660282 Homeobox
649645 grail3.0001064801 Homeobox
650992 grail3.0026036101 Homeobox
654197 grail3.0013043901 KNOX1
655260 grail3.0019015601 Homeobox
655458 grail3.0019031001 Homeobox
656212 grail3.0049030001 Homeobox
658310 grail3.0036024801 ELK Homeobox KNOX1 KNOX2
659606 grail3.0022019601 Homeobox
661900 grail3.0015005801 HALZ Homeobox
710537 estExt_Genewise1_v1.C_LG_II1820 ELK Homeobox KNOX1 KNOX2
711025 estExt_Genewise1_v1.C_LG_II2767 Homeobox
715838 estExt_Genewise1_v1.C_LG_V2675 HALZ Homeobox
716449 estExt_Genewise1_v1.C_LG_V4715 HALZ Homeobox
716797 estExt_Genewise1_v1.C_LG_VI0194 Homeobox POX
717176 estExt_Genewise1_v1.C_LG_VI1097 Homeobox POX
718007 estExt_Genewise1_v1.C_LG_VII0041 HALZ Homeobox
721939 estExt_Genewise1_v1.C_LG_IX1644 Homeobox POX
723473 estExt_Genewise1_v1.C_LG_IX4631 Homeobox POX
728097 estExt_Genewise1_v1.C_LG_XI3050 Homeobox
741921 estExt_Genewise1_v1.C_660759 Homeobox MEKHLA START
752175 fgenesh4_pg.C_LG_I001778 Homeobox
753021 fgenesh4_pg.C_LG_I002624 Homeobox PHD
754104 fgenesh4_pg.C_LG_II000284 Homeobox POX
754105 fgenesh4_pg.C_LG_II000285 Homeobox POX
758451 fgenesh4_pg.C_LG_IV000079 Homeobox START
762222 fgenesh4_pg.C_LG_VI000532 HALZ Homeobox
763767 fgenesh4_pg.C_LG_VII000112 Homeobox
765501 fgenesh4_pg.C_LG_VIII000515 Homeobox
768403 fgenesh4_pg.C_LG_IX001454 Homeobox
769523 fgenesh4_pg.C_LG_X001013 Homeobox
772238 fgenesh4_pg.C_LG_XII000013 KNOX1
773381 fgenesh4_pg.C_LG_XII001156 Homeobox START
774292 fgenesh4_pg.C_LG_XIV000202 Homeobox START
778787 fgenesh4_pg.C_LG_XVIII000155 Homeobox POX
778882 fgenesh4_pg.C_LG_XVIII000250 Homeobox MEKHLA START
784120 fgenesh4_pg.C_scaffold_122000084 Homeobox START
796489 fgenesh4_pg.C_scaffold_29000247 Homeobox START
797543 fgenesh4_pm.C_LG_I000546 Homeobox START
797557 fgenesh4_pm.C_LG_I000560 Homeobox MEKHLA START
799128 fgenesh4_pm.C_LG_II000817 HALZ Homeobox
799722 fgenesh4_pm.C_LG_III000187 HALZ HD-ZIP_N Homeobox
802149 fgenesh4_pm.C_LG_VI000496 HALZ Homeobox
805455 fgenesh4_pm.C_LG_X000761 Homeobox
807937 fgenesh4_pm.C_LG_XV000148 HALZ Homeobox
809560 fgenesh4_pm.C_LG_XIX000125 Homeobox
811717 fgenesh4_pm.C_scaffold_166000014 ELK Homeobox KNOX1 KNOX2
815792 estExt_fgenesh4_pg.C_LG_I2905 Homeobox MEKHLA START
815956 estExt_fgenesh4_pg.C_LG_II0076 Homeobox
816434 estExt_fgenesh4_pg.C_LG_II1036 HALZ Homeobox
817110 estExt_fgenesh4_pg.C_LG_III0408 Homeobox START
817127 estExt_fgenesh4_pg.C_LG_III0436 Homeobox MEKHLA START
820741 estExt_fgenesh4_pg.C_LG_VIII1313 HALZ Homeobox
822005 estExt_fgenesh4_pg.C_LG_X0852 HALZ Homeobox
825765 estExt_fgenesh4_pg.C_LG_XVIII0454 ELK KNOX1 KNOX2
826053 estExt_fgenesh4_pg.C_LG_XVIII1192 Homeobox PHD
827060 estExt_fgenesh4_pg.C_570090 Homeobox
827106 estExt_fgenesh4_pg.C_570199 Homeobox
828769 estExt_fgenesh4_pg.C_2360002 Homeobox MEKHLA START
830237 estExt_fgenesh4_pm.C_LG_II0461 HALZ Homeobox
830322 estExt_fgenesh4_pm.C_LG_II0606 HALZ HD-ZIP_N Homeobox
830518 estExt_fgenesh4_pm.C_LG_II1004 Homeobox START
832118 estExt_fgenesh4_pm.C_LG_VI0713 Homeobox MEKHLA START
834200 estExt_fgenesh4_pm.C_LG_XII0033 Homeobox START
834933 estExt_fgenesh4_pm.C_LG_XIV0411 Homeobox START
836454 estExt_fgenesh4_pm.C_400124 Homeobox

General references

Bharathan, G; Janssen, BJ; Kellogg, EA; Sinha, N. 1997. Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? Proc. Natl. Acad. Sci. U.S.A. 94(25):13749-53 PUBMEDID:9391098
Chan, RL; Gago, GM; Palena, CM; Gonzalez, DH. 1998. Homeoboxes in plant development. Biochim. Biophys. Acta 1442(1):1-19 PUBMEDID:9767075
Kappen, C. 2000. The homeodomain: an ancient evolutionary motif in animals and plants. Comput. Chem. 24(1):95-103 PUBMEDID:10642882
Scott, MP; Tamkun, JW; Hartzell, GW. 1989. The structure and function of the homeodomain. Biochim. Biophys. Acta 989(1):25-48 PUBMEDID:2568852