Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor HB Family

Description

Kappen. 2000: The homeodomain is a DNA-binding motif within transcription factor proteins. These transcription factors may be involved in cell differentiation and control of cell growth, as well as patterning of diverse organisms.

Members of this family
  SHOULD possess Homeobox KNOX1 KNOX2 domains

Domain alignments

This family is also present in:

References

There are 71 gene models in this family



Gene modelDescriptionDomains
127676 fgenesh1_pm.C_chr_4000979 HALZ Homeobox
143200 estExt_fgenesh1_pm.C_chr_30521 ELK Homeobox KNOX1 KNOX2
147812 estExt_fgenesh1_kg.C_chr_20205 HALZ Homeobox
148717 estExt_fgenesh1_kg.C_chr_40274 HALZ Homeobox
149329 estExt_fgenesh1_kg.C_chr_70118 HALZ Homeobox
3992625 gw1.10.753.1 HALZ Homeobox
3994051 gw1.9.882.1 Homeobox
4024505 gw1.7.3811.1 Homeobox
4153315 gw1.7.16970.1 HALZ Homeobox
4153331 gw1.2.16991.1 HALZ Homeobox
4154399 gw1.9.16826.1 Homeobox
4154403 gw1.6.17389.1 Homeobox
4164406 gw1.3.19751.1 Homeobox
4741519 estExt_Genewise1.C_chr_11907 ELK Homeobox KNOX1 KNOX2
4741523 estExt_Genewise1.C_chr_11914 ELK Homeobox KNOX1 KNOX2
4743203 estExt_Genewise1.C_chr_17152 HALZ Homeobox
4745673 estExt_Genewise1.C_chr_111326 HALZ Homeobox
4746128 estExt_Genewise1.C_chr_112102 ELK KNOX1 KNOX2
4761767 estExt_Genewise1.C_chr_66729 HALZ Homeobox
4769352 estExt_Genewise1.C_chr_100134 Homeobox POX
4771200 estExt_Genewise1.C_chr_107150 ELK KNOX1 KNOX2
4793525 e_gw1.2.21688.1 Homeobox
4805765 e_gw1.3.17619.1 Homeobox
4807299 e_gw1.3.18150.1 Homeobox POX
4813232 e_gw1.4.15373.1 HALZ Homeobox
4818400 e_gw1.5.1500.1 Homeobox
4827832 e_gw1.6.15871.1 HALZ Homeobox
4831496 e_gw1.6.17391.1 Homeobox
4859894 e_gw1.10.755.1 HALZ Homeobox
4868421 estExt_Genewise1Plus.C_chr_12408 Homeobox POX
4868630 estExt_Genewise1Plus.C_chr_12763 Homeobox MEKHLA START
4869231 estExt_Genewise1Plus.C_chr_14113 Homeobox MEKHLA START
4872866 estExt_Genewise1Plus.C_chr_112335 Homeobox MEKHLA START
4873142 estExt_Genewise1Plus.C_chr_20354 ELK Homeobox KNOX1 KNOX2
4879370 estExt_Genewise1Plus.C_chr_37750 HALZ Homeobox
4881280 estExt_Genewise1Plus.C_chr_310912 Homeobox
4895471 estExt_Genewise1Plus.C_chr_97182 Homeobox PHD
4975380 fgenesh1_pg.C_chr_3002495 DDT Homeobox
4977562 fgenesh1_pg.C_chr_4000395 HALZ Homeobox
4978058 fgenesh1_pg.C_chr_4000891 Homeobox POX
4988218 fgenesh1_pg.C_chr_7002308 HALZ Homeobox
4998672 estExt_fgenesh1_pg.C_chr_14502 Homeobox
4998721 estExt_fgenesh1_pg.C_chr_14575 HALZ Homeobox
4999003 estExt_fgenesh1_pg.C_chr_15038 Homeobox POX
4999874 estExt_fgenesh1_pg.C_chr_21986 HALZ Homeobox
5000706 estExt_fgenesh1_pg.C_chr_23486 Homeobox
5001273 estExt_fgenesh1_pg.C_chr_30266 Homeobox MEKHLA START
5005809 estExt_fgenesh1_pg.C_chr_52166 Homeobox
5009769 estExt_fgenesh1_pg.C_chr_91612 Homeobox POX
5011106 estExt_fgenesh1_pg.C_chr_101911 Homeobox
5030003 Sb01g036670 Homeobox
5032202 Sb10g028630 HALZ Homeobox
5036401 Sb03g030770 DDT Homeobox
5036832 Sb03g038080 Homeobox
5048052 Sb01g006790 ELK Homeobox KNOX1 KNOX2
5048209 Sb01g009130 Homeobox POX
5048405 Sb01g012200 ELK Homeobox KNOX1 KNOX2
5048886 Sb01g022420 HALZ Homeobox
5049065 Sb01g029000 HALZ HD-ZIP_N Homeobox
5049153 Sb01g030620 Homeobox POX
5049873 Sb01g042030 HALZ Homeobox
5050143 Sb01g046170 Homeobox POX
5051037 Sb02g020940 Homeobox
5051514 Sb02g030660 HALZ Homeobox
5053987 Sb03g039380 Homeobox
5054671 Sb04g003450 Homeobox PHD
5056382 Sb05g003750 Homeobox POX
5059813 Sb08g021350 Homeobox MEKHLA START
5059881 Sb08g022960 Homeobox POX
5060037 Sb09g002520 ELK Homeobox KNOX1 KNOX2
5061822 Sb10g022210 Homeobox

General references

Bharathan, G; Janssen, BJ; Kellogg, EA; Sinha, N. 1997. Did homeodomain proteins duplicate before the origin of angiosperms, fungi, and metazoa? Proc. Natl. Acad. Sci. U.S.A. 94(25):13749-53 PUBMEDID:9391098
Chan, RL; Gago, GM; Palena, CM; Gonzalez, DH. 1998. Homeoboxes in plant development. Biochim. Biophys. Acta 1442(1):1-19 PUBMEDID:9767075
Kappen, C. 2000. The homeodomain: an ancient evolutionary motif in animals and plants. Comput. Chem. 24(1):95-103 PUBMEDID:10642882
Scott, MP; Tamkun, JW; Hartzell, GW. 1989. The structure and function of the homeodomain. Biochim. Biophys. Acta 989(1):25-48 PUBMEDID:2568852