Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata HMG Family

Description

Griess et al. 1993: HMG boxes were initially identified as DNA-binding domains of the human RNA polymerase I (pol I) transcription factor hUBF and the animal high-mobility-group (HMG) protein family HMG1.

Members of this family
  SHOULD possess HMG_box domain
  SHOULD NOT possess ARID YABBY domains

Domain alignments

This family is also present in:

References

There are 12 gene models in this family



Gene modelDescriptionDomains
323737 fgenesh1_pm.C_scaffold_5001281 HMG_box
472301 fgenesh2_kg.1__2255__AT1G20693.2 HMG_box
472304 fgenesh2_kg.1__2258__AT1G20696.3 HMG_box
480649 fgenesh2_kg.3__3350__AT2G17560.1 HMG_box
482406 fgenesh2_kg.4__1466__AT2G34450.2 HMG_box
488801 fgenesh2_kg.6__1935__AT5G23420.1 HMG_box
489947 fgenesh2_kg.6__3081__AT4G11080.1 HMG_box
856999 Al_scaffold_0007_498 HMG_box
905150 scaffold_500854.1 HMG_box Rtt106 SSrecog
910355 scaffold_602412.1 HMG_box
910356 scaffold_602413.1 HMG_box
911461 scaffold_603518.1 HMG_box

General references

Grasser, KD; Teo, SH; Lee, KB; Broadhurst, RW; Rees, C; Hardman, CH; Thomas, JO. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253(3):787-95 PUBMEDID:9654080
Griess, EA; Rensing, SA; Grasser, KD; Maier, UG; Feix, G. 1993. Phylogenetic relationships of HMG box DNA-binding domains. J. Mol. Evol. 37(2):204-10 PUBMEDID:8411210
Wissmüller, S; Kosian, T; Wolf, M; Finzsch, M; Wegner, M. 2006. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Nucleic Acids Res. 34(6):1735-44 PUBMEDID:16582099