Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana HMG Family

Description

Griess et al. 1993: HMG boxes were initially identified as DNA-binding domains of the human RNA polymerase I (pol I) transcription factor hUBF and the animal high-mobility-group (HMG) protein family HMG1.

Members of this family
  SHOULD possess HMG_box domain
  SHOULD NOT possess ARID YABBY domains

Domain alignments

This family is also present in:

References

There are 21 gene models in this family



Gene modelDescriptionDomains
AT1G20693.1 HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor HMG_box
AT1G20693.2 HMGB2 (HIGH MOBILITY GROUP B 2) HMG_box
AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2) HMG_box
AT1G20696.1 HMGB3 (HIGH MOBILITY GROUP B 3); transcription factor HMG_box
AT1G20696.2 HMGB3 (HIGH MOBILITY GROUP B 3) HMG_box
AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3) HMG_box
AT2G17560.1 HMGB4 (HIGH MOBILITY GROUP B 4); transcription factor HMG_box
AT2G17560.2 HMGB4 (HIGH MOBILITY GROUP B 4) HMG_box
AT2G17560.3 HMGB4 (HIGH MOBILITY GROUP B 4) HMG_box
AT2G34450.1 high mobility group (HMG1/2) family protein HMG_box
AT2G34450.2 high mobility group (HMG1/2) family protein HMG_box
AT3G28730.1 ATHMG (HIGH MOBILITY GROUP); transcription factor HMG_box Rtt106 SSrecog
AT3G51880.1 HMGB1 (HIGH MOBILITY GROUP B 1); transcription factor HMG_box
AT3G51880.2 HMGB1 (HIGH MOBILITY GROUP B 1) HMG_box
AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1) HMG_box
AT4G11080.1 high mobility group (HMG1/2) family protein HMG_box
AT4G23800.1 high mobility group (HMG1/2) family protein HMG_box
AT4G35570.1 HMGB5 (HIGH MOBILITY GROUP B 5); transcription factor HMG_box
AT5G23405.1 high mobility group (HMG1/2) family protein HMG_box
AT5G23405.2 high mobility group (HMG1/2) family protein HMG_box
AT5G23420.1 HMGB6 (High mobility group B 6); transcription factor HMG_box

General references

Grasser, KD; Teo, SH; Lee, KB; Broadhurst, RW; Rees, C; Hardman, CH; Thomas, JO. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253(3):787-95 PUBMEDID:9654080
Griess, EA; Rensing, SA; Grasser, KD; Maier, UG; Feix, G. 1993. Phylogenetic relationships of HMG box DNA-binding domains. J. Mol. Evol. 37(2):204-10 PUBMEDID:8411210
Wissmüller, S; Kosian, T; Wolf, M; Finzsch, M; Wegner, M. 2006. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Nucleic Acids Res. 34(6):1735-44 PUBMEDID:16582099