Plant Transcription factor database - Universität Potsdam
version: 3.0

Micromonas sp. RCC299 HMG Family

Description

Griess et al. 1993: HMG boxes were initially identified as DNA-binding domains of the human RNA polymerase I (pol I) transcription factor hUBF and the animal high-mobility-group (HMG) protein family HMG1.

Members of this family
  SHOULD possess HMG_box domain
  SHOULD NOT possess ARID YABBY domains

Domain alignments

This family is also present in:

References

There are 10 gene models in this family



Gene modelDescriptionDomains
106177 estExt_fgenesh2_pg.C_Chr_100288 DEK_C HMG_box SWIB
108008 est_cluster_kg.Chr_03__165__3203128:2 HMG_box
108452 est_cluster_kg.Chr_06__96__3201860:2 HMG_box
108596 est_cluster_kg.Chr_07__66__3199198:1 HMG_box
55677 EuGene.0200010054 HMG_box PHD SET
57400 EuGene.0300010828 HMG_box Hydrolase_3 S6PP
59015 EuGene.0600010017 HMG_box
59701 EuGene.0600010703 HMG_box Topoisom_bac Toprim zf-C4_Topoisom
62388 EuGene.1100010174 HMG_box
63692 EuGene.1300010342 HMG_box Rtt106 SSrecog

General references

Grasser, KD; Teo, SH; Lee, KB; Broadhurst, RW; Rees, C; Hardman, CH; Thomas, JO. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253(3):787-95 PUBMEDID:9654080
Griess, EA; Rensing, SA; Grasser, KD; Maier, UG; Feix, G. 1993. Phylogenetic relationships of HMG box DNA-binding domains. J. Mol. Evol. 37(2):204-10 PUBMEDID:8411210
Wissmüller, S; Kosian, T; Wolf, M; Finzsch, M; Wegner, M. 2006. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Nucleic Acids Res. 34(6):1735-44 PUBMEDID:16582099