Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica HMG Family

Description

Griess et al. 1993: HMG boxes were initially identified as DNA-binding domains of the human RNA polymerase I (pol I) transcription factor hUBF and the animal high-mobility-group (HMG) protein family HMG1.

Members of this family
  SHOULD possess HMG_box domain
  SHOULD NOT possess ARID YABBY domains

Domain alignments

This family is also present in:

References

There are 12 gene models in this family



Gene modelDescriptionDomains
OsIBCD000567 Chr01_849,1944,,,1,1944, HMG_box Rtt106 SSrecog
OsIBCD002832 Chr01_4476,402,,,1,402, HMG_box
OsIBCD002835 Chr01_4480,402,,,1,402, HMG_box
OsIBCD005761 Chr02_1517,1845,,,1,1845, HMG_box
OsIBCD006365 Chr02_2634,1320,,,1,1320, HMG_box
OsIBCD007516 Chr02_4458,438,,,1,438, HMG_box
OsIBCD015268 Chr04_4125,399,,,1,399, HMG_box
OsIBCD016679 Chr05_824,1923,,,1,1923, HMG_box Rtt106 SSrecog
OsIBCD022069 Chr06_4835,453,,,1,453, HMG_box
OsIBCD024722 Chr08_15,615,,,1,615, HMG_box
OsIBCD024728 Chr08_26,615,,,1,615, HMG_box
OsIBCD029327 Chr09_3148,420,,,1,420, HMG_box

General references

Grasser, KD; Teo, SH; Lee, KB; Broadhurst, RW; Rees, C; Hardman, CH; Thomas, JO. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253(3):787-95 PUBMEDID:9654080
Griess, EA; Rensing, SA; Grasser, KD; Maier, UG; Feix, G. 1993. Phylogenetic relationships of HMG box DNA-binding domains. J. Mol. Evol. 37(2):204-10 PUBMEDID:8411210
Wissmüller, S; Kosian, T; Wolf, M; Finzsch, M; Wegner, M. 2006. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Nucleic Acids Res. 34(6):1735-44 PUBMEDID:16582099