Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa HMG Family

Description

Griess et al. 1993: HMG boxes were initially identified as DNA-binding domains of the human RNA polymerase I (pol I) transcription factor hUBF and the animal high-mobility-group (HMG) protein family HMG1.

Members of this family
  SHOULD possess HMG_box domain
  SHOULD NOT possess ARID YABBY domains

Domain alignments

This family is also present in:

References

There are 12 gene models in this family



Gene modelDescriptionDomains
180056 gw1.I.8656.1 HMG_box
206736 gw1.V.2137.1 HMG_box
555927 eugene3.00040640 HMG_box
567282 eugene3.00101840 HMG_box
577589 eugene3.00170331 HMG_box Rtt106 SSrecog
642803 grail3.0003005602 HMG_box
656232 grail3.0049031601 HMG_box
712808 estExt_Genewise1_v1.C_LG_IV0118 HMG_box Rtt106 SSrecog
800677 fgenesh4_pm.C_LG_IV000364 HMG_box
817401 estExt_fgenesh4_pg.C_LG_III1146 HMG_box
818368 estExt_fgenesh4_pg.C_LG_V0410 HMG_box
820147 estExt_fgenesh4_pg.C_LG_VII1313 HMG_box

General references

Grasser, KD; Teo, SH; Lee, KB; Broadhurst, RW; Rees, C; Hardman, CH; Thomas, JO. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253(3):787-95 PUBMEDID:9654080
Griess, EA; Rensing, SA; Grasser, KD; Maier, UG; Feix, G. 1993. Phylogenetic relationships of HMG box DNA-binding domains. J. Mol. Evol. 37(2):204-10 PUBMEDID:8411210
Wissmüller, S; Kosian, T; Wolf, M; Finzsch, M; Wegner, M. 2006. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Nucleic Acids Res. 34(6):1735-44 PUBMEDID:16582099