Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor HMG Family

Description

Griess et al. 1993: HMG boxes were initially identified as DNA-binding domains of the human RNA polymerase I (pol I) transcription factor hUBF and the animal high-mobility-group (HMG) protein family HMG1.

Members of this family
  SHOULD possess HMG_box domain
  SHOULD NOT possess ARID YABBY domains

Domain alignments

This family is also present in:

References

There are 9 gene models in this family



Gene modelDescriptionDomains
149116 estExt_fgenesh1_kg.C_chr_60167 HMG_box
4748817 estExt_Genewise1.C_chr_28836 HMG_box
4817416 e_gw1.4.3380.1 HMG_box
4851462 e_gw1.9.2070.1 HMG_box Rtt106 SSrecog
4877521 estExt_Genewise1Plus.C_chr_30724 HMG_box Rtt106 SSrecog
4898798 estExt_Genewise1Plus.C_chr_108346 HMG_box
4975349 fgenesh1_pg.C_chr_3002464 HMG_box
5004741 estExt_fgenesh1_pg.C_chr_42761 HMG_box
5007288 estExt_fgenesh1_pg.C_chr_70005 HMG_box

General references

Grasser, KD; Teo, SH; Lee, KB; Broadhurst, RW; Rees, C; Hardman, CH; Thomas, JO. 1998. DNA-binding properties of the tandem HMG boxes of high-mobility-group protein 1 (HMG1). Eur. J. Biochem. 253(3):787-95 PUBMEDID:9654080
Griess, EA; Rensing, SA; Grasser, KD; Maier, UG; Feix, G. 1993. Phylogenetic relationships of HMG box DNA-binding domains. J. Mol. Evol. 37(2):204-10 PUBMEDID:8411210
Wissmüller, S; Kosian, T; Wolf, M; Finzsch, M; Wegner, M. 2006. The high-mobility-group domain of Sox proteins interacts with DNA-binding domains of many transcription factors. Nucleic Acids Res. 34(6):1735-44 PUBMEDID:16582099