version: 3.0
Zea mays IWS1 Family
Description
PFAM: This family consists of a the C terminal region of a number of eukaryotic hypothetical proteins which are homologous to the Saccharomyces cerevisiae protein IWS1. IWS1 is known to be an Pol II transcription elongation factor and interacts with Spt6 and Spt5.
Members of this familySHOULD possess IWS1_C domain
This family is also present in:
- Galdieria sulphuraria
- Micromonas pusilla CCMP1545
- Micromonas sp. RCC299
- Ostreococcus lucimarinus
- Ostreococcus tauri
- Chlamydomonas reinhardtii
- Chlorella sp. NC64A
- Coccomyxa sp. C-169
- Physcomitrella patens
- Selaginella moellendorffii
- Oryza sativa subsp. indica
- Oryza sativa subsp. japonica
- Sorghum bicolor
- Arabidopsis lyrata
- Arabidopsis thaliana
- Carica papaya
- Populus trichocarpa
- Vitis vinifera
There are 7 gene models in this family
General references
Krogan, NJ; Kim, M; Ahn, SH; Zhong, G; Kobor, MS; Cagney, G; Emili, A; Shilatifard, A; Buratowski, S; Greenblatt, JF. 2002. RNA polymerase II elongation factors of Saccharomyces cerevisiae: a targeted proteomics approach. Mol. Cell. Biol. 22(20):6979-92 PUBMEDID:12242279Design qRT-PCR primers using Quantprime



