Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 147 gene models in this family



Gene modelDescriptionDomains
314948 fgenesh1_pm.C_scaffold_1003728 Myb_DNA-binding
315039 fgenesh1_pm.C_scaffold_2000072 Myb_DNA-binding
321463 fgenesh1_pm.C_scaffold_4001520 Myb_DNA-binding
322901 fgenesh1_pm.C_scaffold_5000445 Myb_DNA-binding
324558 fgenesh1_pm.C_scaffold_5002102 Myb_DNA-binding
324904 fgenesh1_pm.C_scaffold_6000124 Myb_DNA-binding
327351 fgenesh1_pm.C_scaffold_6002571 Myb_DNA-binding
328881 fgenesh1_pm.C_scaffold_7001108 Myb_DNA-binding
330465 fgenesh1_pm.C_scaffold_7002692 Myb_DNA-binding
330471 fgenesh1_pm.C_scaffold_7002698 Myb_DNA-binding
331771 fgenesh1_pm.C_scaffold_8001114 Myb_DNA-binding
331925 fgenesh1_pm.C_scaffold_8001268 Myb_DNA-binding
334927 fgenesh1_pg.C_scaffold_1001492 Myb_DNA-binding
335126 fgenesh1_pg.C_scaffold_1001691 Myb_DNA-binding
335127 fgenesh1_pg.C_scaffold_1001692 Myb_DNA-binding
335722 fgenesh1_pg.C_scaffold_1002287 Myb_DNA-binding
338851 fgenesh1_pg.C_scaffold_2000950 Myb_DNA-binding
339072 fgenesh1_pg.C_scaffold_2001171 Myb_DNA-binding
341076 fgenesh1_pg.C_scaffold_3000839 BRF1 Myb_DNA-binding TFIIB
347167 fgenesh1_pg.C_scaffold_5000559 Myb_DNA-binding
347705 fgenesh1_pg.C_scaffold_5001097 Myb_DNA-binding
347985 fgenesh1_pg.C_scaffold_5001377 Myb_DNA-binding
349318 fgenesh1_pg.C_scaffold_5002710 Myb_DNA-binding
349486 fgenesh1_pg.C_scaffold_6000079 Myb_DNA-binding
353481 fgenesh1_pg.C_scaffold_7000654 Myb_DNA-binding
354228 fgenesh1_pg.C_scaffold_7001401 Myb_DNA-binding
354789 fgenesh1_pg.C_scaffold_7001962 Myb_DNA-binding
355996 fgenesh1_pg.C_scaffold_7003169 Myb_DNA-binding
357679 fgenesh1_pg.C_scaffold_8001466 Myb_DNA-binding
470636 fgenesh2_kg.1__590__AT1G06180.1 Myb_DNA-binding
471078 fgenesh2_kg.1__1032__AT1G09770.1 Myb_DNA-binding
471607 fgenesh2_kg.1__1561__AT1G14350.1 Myb_DNA-binding
472077 fgenesh2_kg.1__2031__AT1G18570.1 Myb_DNA-binding
472503 fgenesh2_kg.1__2457__AT1G22640.1 Myb_DNA-binding
473608 fgenesh2_kg.1__3562__AT1G34670.1 Myb_DNA-binding
473681 fgenesh2_kg.1__3635__AT1G35515.1 Myb_DNA-binding
473935 fgenesh2_kg.1__3889__AT1G48000.1 Myb_DNA-binding
474684 fgenesh2_kg.1__4638__AT1G56160.1 Myb_DNA-binding
474823 fgenesh2_kg.1__4777__AT1G56650.1 Myb_DNA-binding
475739 fgenesh2_kg.2__869__AT1G66370.1 Myb_DNA-binding
476090 fgenesh2_kg.2__1220__AT1G69560.1 Myb_DNA-binding
476550 fgenesh2_kg.2__1680__AT1G74080.1 Myb_DNA-binding
476577 fgenesh2_kg.2__1707__AT1G74430.1 Myb_DNA-binding
476602 fgenesh2_kg.2__1732__AT1G74650.1 Myb_DNA-binding
477086 fgenesh2_kg.2__2216__AT1G79180.1 Myb_DNA-binding
477416 fgenesh2_kg.3__117__AT3G01140.1 Myb_DNA-binding
477540 fgenesh2_kg.3__241__AT3G02940.1 Myb_DNA-binding
477955 fgenesh2_kg.3__656__AT3G06490.1 Myb_DNA-binding
478147 fgenesh2_kg.3__848__AT3G08500.1 Myb_DNA-binding
478469 fgenesh2_kg.3__1170__AT3G11280.1 Myb_DNA-binding
478481 fgenesh2_kg.3__1182__AT3G11440.1 Myb_DNA-binding
478645 fgenesh2_kg.3__1346__AT3G12820.1 Myb_DNA-binding
478795 fgenesh2_kg.3__1496__AT3G13890.1 Myb_DNA-binding
479301 fgenesh2_kg.3__2002__AT3G18100.1 Myb_DNA-binding
479838 fgenesh2_kg.3__2539__AT3G23250.1 Myb_DNA-binding
479944 fgenesh2_kg.3__2645__AT3G24310.1 Myb_DNA-binding
479983 fgenesh2_kg.3__2684__AT5G58850.1 Myb_DNA-binding
481200 fgenesh2_kg.4__260__AT2G23290.1 Myb_DNA-binding
482173 fgenesh2_kg.4__1233__AT2G32460.2 Myb_DNA-binding
482672 fgenesh2_kg.4__1732__AT2G36890.1 Myb_DNA-binding
482816 fgenesh2_kg.4__1876__AT2G38090.1 Myb_DNA-binding
483895 fgenesh2_kg.4__2955__AT2G47190.1 Myb_DNA-binding
483923 fgenesh2_kg.4__2983__AT2G47460.1 Myb_DNA-binding
484189 fgenesh2_kg.5__181__AT2G02820.2 Myb_DNA-binding
484568 fgenesh2_kg.5__560__AT3G27785.1 Myb_DNA-binding
484622 fgenesh2_kg.5__614__AT3G28470.1 Myb_DNA-binding
484660 fgenesh2_kg.5__652__AT3G28910.1 Myb_DNA-binding
484718 fgenesh2_kg.5__710__AT3G30210.1 Myb_DNA-binding
485364 fgenesh2_kg.5__1356__AT3G50060.1 Myb_DNA-binding
485695 fgenesh2_kg.5__1687__AT3G53200.1 Myb_DNA-binding
486007 fgenesh2_kg.5__1999__AT3G55730.1 Myb_DNA-binding
486519 fgenesh2_kg.5__2511__AT3G60460.1 Myb_DNA-binding
487412 fgenesh2_kg.6__546__AT5G06100.3 Myb_DNA-binding
487604 fgenesh2_kg.6__738__AT5G07690.1 Myb_DNA-binding
487691 fgenesh2_kg.6__825__AT5G08520.1 Myb_DNA-binding
487856 fgenesh2_kg.6__990__AT5G10280.1 Myb_DNA-binding
487937 fgenesh2_kg.6__1071__AT5G11050.1 Myb_DNA-binding
487987 fgenesh2_kg.6__1121__AT5G11510.1 Myb_DNA-binding
488320 fgenesh2_kg.6__1454__AT5G14750.1 Myb_DNA-binding
488379 fgenesh2_kg.6__1513__AT5G15310.1 Myb_DNA-binding
488535 fgenesh2_kg.6__1669__AT5G16770.1 Myb_DNA-binding
488646 fgenesh2_kg.6__1780__AT5G17800.1 Myb_DNA-binding
489496 fgenesh2_kg.6__2630__AT5G26660.1 Myb_DNA-binding
489795 fgenesh2_kg.6__2929__AT4G09460.1 Myb_DNA-binding
490409 fgenesh2_kg.6__3543__AT4G01680.1 Myb_DNA-binding
490512 fgenesh2_kg.6__3646__AT4G00540.2 Myb_DNA-binding
490626 fgenesh2_kg.7__59__AT4G38620.1 Myb_DNA-binding
490838 fgenesh2_kg.7__271__AT4G37780.1 Myb_DNA-binding
491433 fgenesh2_kg.7__866__AT4G32730.2 Myb_DNA-binding
492106 fgenesh2_kg.7__1539__AT4G26930.1 Myb_DNA-binding
492601 fgenesh2_kg.7__2034__AT4G22680.1 Myb_DNA-binding
492740 fgenesh2_kg.7__2173__AT4G21440.1 Myb_DNA-binding
493095 fgenesh2_kg.7__2528__AT4G17785.1 Myb_DNA-binding
493616 fgenesh2_kg.7__3049__AT5G35550.1 Myb_DNA-binding
495021 fgenesh2_kg.8__837__AT5G49620.1 Myb_DNA-binding
495295 fgenesh2_kg.8__1111__AT5G52260.1 Myb_DNA-binding
496013 fgenesh2_kg.8__1829__AT5G58900.1 Myb_DNA-binding
496112 fgenesh2_kg.8__1928__AT5G59780.3 Myb_DNA-binding
496240 fgenesh2_kg.8__2056__AT5G60890.1 Myb_DNA-binding
496423 fgenesh2_kg.8__2239__AT5G62470.1 Myb_DNA-binding
496754 fgenesh2_kg.8__2570__AT5G65230.1 Myb_DNA-binding
496816 fgenesh2_kg.8__2632__AT5G65790.1 Myb_DNA-binding
497036 fgenesh2_kg.9__1__AT4G13480.1 Myb_DNA-binding
497373 fgenesh2_kg.277__1__AT5G58850.1 Myb_DNA-binding
861189 Al_scaffold_0006_698 Myb_DNA-binding
862662 Al_scaffold_0006_2171 Myb_DNA-binding
862733 Al_scaffold_0006_2242 Myb_DNA-binding
864075 Al_scaffold_0006_3584 Myb_DNA-binding
866329 Al_scaffold_0005_1808 Myb_DNA-binding
868812 Al_scaffold_0004_975 Myb_DNA-binding
869410 Al_scaffold_0004_1573 Myb_DNA-binding
870409 Al_scaffold_0004_2572 Myb_DNA-binding
871418 Al_scaffold_0003_59 Myb_DNA-binding
877443 Al_scaffold_0002_2037 Myb_DNA-binding
885378 Al_scaffold_0008_1642 Myb_DNA-binding
885785 Al_scaffold_0008_2049 COX15-CtaA Myb_DNA-binding
888116 scaffold_100910.1 Myb_DNA-binding
888197 scaffold_100991.1 Myb_DNA-binding
889207 scaffold_102001.1 Myb_DNA-binding
894261 scaffold_201335.1 Myb_DNA-binding
894282 scaffold_201356.1 Myb_DNA-binding
894283 scaffold_201357.1 Myb_DNA-binding
894284 scaffold_201358.1 Myb_DNA-binding
897073 scaffold_301043.1 Myb_DNA-binding
897482 scaffold_301452.1 Myb_DNA-binding
897586 scaffold_301556.1 Myb_DNA-binding
899594 scaffold_303564.1 Myb_DNA-binding
899987 scaffold_303957.1 Myb_DNA-binding
902907 scaffold_402408.1 Myb_DNA-binding
904425 scaffold_500129.1 Myb_DNA-binding
905190 scaffold_500894.1 Myb_DNA-binding
905992 scaffold_501696.1 Myb_DNA-binding
906588 scaffold_502292.1 Myb_DNA-binding
908364 scaffold_600421.1 Myb_DNA-binding
908494 scaffold_600551.1 Myb_DNA-binding
909234 scaffold_601291.1 Myb_DNA-binding
909643 scaffold_601700.1 Myb_DNA-binding
912886 scaffold_700628.1 Myb_DNA-binding
914801 scaffold_702543.1 Myb_DNA-binding
915859 scaffold_703601.1 Myb_DNA-binding
916273 scaffold_704015.1 Myb_DNA-binding
916274 scaffold_704016.1 Myb_DNA-binding
917913 scaffold_801313.1 Myb_DNA-binding
918940 scaffold_802340.1 Myb_DNA-binding
919385 scaffold_802785.1 Myb_DNA-binding
919487 scaffold_802887.1 Myb_DNA-binding
919978 scaffold_803378.1 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608