Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 166 gene models in this family



Gene modelDescriptionDomains
AT1G06180.1 ATMYB13 (myb domain protein 13); DNA binding / transcription factor Myb_DNA-binding
AT1G08810.1 MYB60 (myb domain protein 60); DNA binding / transcription factor Myb_DNA-binding
AT1G09540.1 ATMYB61/MYB61 (MYB DOMAIN PROTEIN 61); DNA binding / transcription factor Myb_DNA-binding
AT1G09770.1 ATCDC5 (ARABIDOPSIS THALIANA HOMOLOG OF CDC5); DNA binding / transcription factor Myb_DNA-binding
AT1G14350.1 FLP (FOUR LIPS); DNA binding / transcription factor Myb_DNA-binding
AT1G14350.2 FLP (FOUR LIPS) Myb_DNA-binding
AT1G16490.1 AtMYB58 (myb domain protein 58); DNA binding / transcription factor Myb_DNA-binding
AT1G17950.1 MYB52 (myb domain protein 52); DNA binding / transcription factor Myb_DNA-binding
AT1G18570.1 MYB51 (MYB DOMAIN PROTEIN 51); DNA binding / transcription factor Myb_DNA-binding
AT1G18710.1 AtMYB47 (myb domain protein 47); DNA binding / transcription factor Myb_DNA-binding
AT1G22640.1 MYB3 (myb domain protein 3); DNA binding / transcription factor Myb_DNA-binding
AT1G25340.1 MYB116 (myb domain protein 116); DNA binding / transcription factor Myb_DNA-binding
AT1G25340.2 MYB116 (myb domain protein 116); DNA binding / transcription factor Myb_DNA-binding
AT1G26780.1 MYB117 (myb domain protein 117); transcription factor Myb_DNA-binding
AT1G34670.1 AtMYB93 (myb domain protein 93); DNA binding / transcription factor Myb_DNA-binding
AT1G35515.1 HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10); DNA binding Myb_DNA-binding
AT1G48000.1 MYB112 (myb domain protein 112); DNA binding / transcription factor Myb_DNA-binding
AT1G49010.1 myb family transcription factor Myb_DNA-binding
AT1G56160.1 AtMYB72/MYB72 (myb domain protein 72); DNA binding / transcription factor Myb_DNA-binding
AT1G56650.1 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1); DNA binding / transcription factor Myb_DNA-binding
AT1G57560.1 AtMYB50 (myb domain protein 50); DNA binding / transcription factor Myb_DNA-binding
AT1G63910.1 ATMYB103 (MYB DOMAIN PROTEIN 103); DNA binding / transcription factor Myb_DNA-binding
AT1G66230.1 MYB20 (myb domain protein 20); DNA binding / transcription factor Myb_DNA-binding
AT1G66370.1 MYB113 (myb domain protein 113); DNA binding / transcription factor Myb_DNA-binding
AT1G66380.1 MYB114 (myb domain protein 114); DNA binding / transcription factor Myb_DNA-binding
AT1G66390.1 PAP2 (PRODUCTION OF ANTHOCYANIN PIGMENT 2); DNA binding / transcription factor Myb_DNA-binding
AT1G68320.1 MYB62 (myb domain protein 62); DNA binding / transcription factor Myb_DNA-binding
AT1G69560.1 MYB105 (myb domain protein 105); DNA binding / transcription factor Myb_DNA-binding
AT1G73410.1 MYB54 (myb domain protein 54); DNA binding / transcription factor Myb_DNA-binding
AT1G74080.1 MYB122 (myb domain protein 122); DNA binding / transcription factor Myb_DNA-binding
AT1G74430.1 MYB95 (myb domain protein 95); DNA binding / transcription factor Myb_DNA-binding
AT1G74650.1 AtMYB31/AtY13 (myb domain protein 31); DNA binding / transcription factor Myb_DNA-binding
AT1G79180.1 AtMYB63 (myb domain protein 63); DNA binding / transcription factor Myb_DNA-binding
AT2G02820.1 MYB88 (myb domain protein 88); DNA binding / transcription factor Myb_DNA-binding
AT2G02820.2 MYB88 (myb domain protein 88); DNA binding / transcription factor Myb_DNA-binding
AT2G16720.1 MYB7 (myb domain protein 7); DNA binding / transcription factor Myb_DNA-binding
AT2G23290.1 AtMYB70 (myb domain protein 70); DNA binding / transcription factor Myb_DNA-binding
AT2G25230.1 MYB100 (myb domain protein 100); DNA binding / transcription factor Myb_DNA-binding
AT2G26950.1 AtMYB104 (myb domain protein 104); DNA binding / transcription factor Myb_DNA-binding
AT2G26960.1 AtMYB81 (myb domain protein 81); DNA binding / transcription factor Myb_DNA-binding
AT2G31180.1 AtMYB14/Myb14at (myb domain protein 14); DNA binding / transcription factor Myb_DNA-binding
AT2G32460.1 AtM1/AtMYB101/MYB101 (myb domain protein 101); DNA binding / transcription factor Myb_DNA-binding
AT2G32460.2 AtM1/AtMYB101/MYB101 (myb domain protein 101) Myb_DNA-binding
AT2G36890.1 ATMYB38/MYB38/RAX2 (myb domain protein 38); DNA binding / transcription factor Myb_DNA-binding
AT2G37630.1 AS1/ATMYB91/ATPHAN/MYB91 (ASYMMETRIC LEAVES 1, MYB DOMAIN PROTEIN 91); DNA binding / protein homodimerization/ transcription factor Myb_DNA-binding
AT2G38090.1 myb family transcription factor Myb_DNA-binding
AT2G39880.1 MYB25 (myb domain protein 25); DNA binding / transcription factor Myb_DNA-binding
AT2G47190.1 MYB2 (myb domain protein 2); DNA binding / transcription factor Myb_DNA-binding
AT2G47460.1 ATMYB12/MYB12 (MYB DOMAIN PROTEIN 12); DNA binding / transcription activator/ transcription factor Myb_DNA-binding
AT3G01140.1 MYB106 (myb domain protein 106); DNA binding / transcription factor Myb_DNA-binding
AT3G01530.1 AtMYB57 (myb domain protein 57); DNA binding / transcription factor Myb_DNA-binding
AT3G02940.1 MYB107 (myb domain protein 107); DNA binding / transcription factor Myb_DNA-binding
AT3G06490.1 MYB108 (MYB DOMAIN PROTEIN 108); DNA binding / transcription factor Myb_DNA-binding
AT3G08500.1 MYB83 (myb domain protein 83); DNA binding / transcription factor Myb_DNA-binding
AT3G09230.1 ATMYB1 (MYB DOMAIN PROTEIN 1); DNA binding / transcription factor Myb_DNA-binding
AT3G09370.1 MYB3R-3 (myb domain protein 3R-3); DNA binding / transcription factor Myb_DNA-binding
AT3G09370.2 MYB3R-3 (myb domain protein 3R-3) Myb_DNA-binding
AT3G10590.1 myb family transcription factor Myb_DNA-binding
AT3G10595.1 myb family transcription factor Myb_DNA-binding
AT3G11280.1 myb family transcription factor Myb_DNA-binding
AT3G11280.2 myb family transcription factor Myb_DNA-binding
AT3G11440.1 ATMYB65 (myb domain protein 65); DNA binding / transcription factor Myb_DNA-binding
AT3G11450.1 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related DnaJ Myb_DNA-binding
AT3G12720.1 AtMYB67/AtY53 (myb domain protein 67); DNA binding / transcription factor Myb_DNA-binding
AT3G12820.1 AtMYB10 (myb domain protein 10); DNA binding / transcription factor Myb_DNA-binding
AT3G13540.1 ATMYB5 (MYB DOMAIN PROTEIN 5); DNA binding / transcription factor Myb_DNA-binding
AT3G13890.1 MYB26 (myb domain protein 26); DNA binding / transcription factor Myb_DNA-binding
AT3G13890.2 MYB26 (myb domain protein 26) Myb_DNA-binding
AT3G18100.1 MYB4R1 (myb domain protein 4R1); transcription factor Myb_DNA-binding
AT3G18100.2 MYB4R1 (myb domain protein 4R1); transcription factor Myb_DNA-binding
AT3G23250.1 AtMYB15/AtY19/MYB15 (myb domain protein 15); DNA binding / transcription factor Myb_DNA-binding
AT3G24310.1 MYB305 (myb domain protein 305); DNA binding / transcription factor Myb_DNA-binding
AT3G27785.1 MYB118 (myb domain protein 118); DNA binding / transcription factor Myb_DNA-binding
AT3G27810.1 ATMYB21 (MYB DOMAIN PROTEIN 21); DNA binding / transcription factor Myb_DNA-binding
AT3G27920.1 GL1 (GLABRA 1); transcription factor Myb_DNA-binding
AT3G28470.1 AtMYB35 (myb domain protein 35); DNA binding / transcription factor Myb_DNA-binding
AT3G28910.1 MYB30 (myb domain protein 30); DNA binding / transcription factor Myb_DNA-binding
AT3G29020.1 MYB110 (myb domain protein 110); DNA binding / transcription factor Myb_DNA-binding
AT3G29020.2 MYB110 (myb domain protein 110) Myb_DNA-binding
AT3G30210.1 MYB121 (myb domain protein 121); DNA binding / transcription factor Myb_DNA-binding
AT3G46130.1 MYB111 (myb domain protein 111); DNA binding / transcription factor Myb_DNA-binding
AT3G47600.1 MYB94 (myb domain protein 94); DNA binding / transcription factor Myb_DNA-binding
AT3G48920.1 AtMYB45 (myb domain protein 45); DNA binding / transcription factor Myb_DNA-binding
AT3G49690.1 ATMYB84/MYB84/RAX3 (myb domain protein 84); DNA binding / transcription factor Myb_DNA-binding
AT3G50060.1 MYB77; DNA binding / transcription factor Myb_DNA-binding
AT3G52250.1 DNA binding / transcription factor Myb_DNA-binding
AT3G53200.1 AtMYB27 (myb domain protein 27); DNA binding / transcription factor Myb_DNA-binding
AT3G55730.1 MYB109 (myb domain protein 109); DNA binding / transcription factor Myb_DNA-binding
AT3G60460.1 DUO1 (DUO POLLEN 1); DNA binding / transcription factor Myb_DNA-binding
AT3G61250.1 AtMYB17 (myb domain protein 17); DNA binding / transcription factor Myb_DNA-binding
AT3G62610.1 AtMYB11 (myb domain protein 11); DNA binding / transcription factor Myb_DNA-binding
AT4G00540.1 ATMYB3R2/MYB3R-2/PC-MYB2 (MYB DOMAIN PROTEIN 3R2, PUTATIVE C-MYB-LIKE TRANSCRIPTION FACTOR); DNA binding / transcription factor Myb_DNA-binding
AT4G00540.2 ATMYB3R2/MYB3R-2/PC-MYB2 (MYB DOMAIN PROTEIN 3R2, PUTATIVE C-MYB-LIKE TRANSCRIPTION FACTOR); DNA binding / transcription factor Myb_DNA-binding
AT4G01680.1 MYB55 (myb domain protein 55); DNA binding / transcription factor Myb_DNA-binding
AT4G01680.2 MYB55 (myb domain protein 55); DNA binding Myb_DNA-binding
AT4G01680.3 MYB55 (myb domain protein 55) Myb_DNA-binding
AT4G05100.1 AtMYB74 (myb domain protein 74); DNA binding / transcription factor Myb_DNA-binding
AT4G09460.1 ATMYB6 (MYB DOMAIN PROTEIN 6); DNA binding / transcription factor Myb_DNA-binding
AT4G13480.1 AtMYB79 (myb domain protein 79); DNA binding / transcription factor Myb_DNA-binding
AT4G17785.1 MYB39 (MYB DOMAIN PROTEIN 39); DNA binding / transcription factor Myb_DNA-binding
AT4G18770.1 MYB98 (myb domain protein 98); DNA binding / transcription factor Myb_DNA-binding
AT4G21440.1 ATM4/ATMYB102 (ARABIDOPSIS MYB-LIKE 102); DNA binding / transcription factor Myb_DNA-binding
AT4G22680.1 MYB85 (myb domain protein 85); DNA binding / transcription factor Myb_DNA-binding
AT4G25560.1 AtMYB18 (myb domain protein 18); DNA binding / transcription factor Myb_DNA-binding
AT4G26930.1 MYB97 (myb domain protein 97); DNA binding / transcription factor Myb_DNA-binding
AT4G28110.1 AtMYB41 (myb domain protein 41); DNA binding / transcription factor Myb_DNA-binding
AT4G32730.1 PC-MYB1 (myb domain protein 3R1); DNA binding / transcription coactivator/ transcription factor Myb_DNA-binding
AT4G32730.2 PC-MYB1 (myb domain protein 3R1); DNA binding / transcription factor Myb_DNA-binding
AT4G33450.1 AtMYB69 (myb domain protein 69); DNA binding / transcription factor Myb_DNA-binding
AT4G34990.1 AtMYB32 (myb domain protein 32); DNA binding / transcription factor Myb_DNA-binding
AT4G37260.1 AtMYB73/MYB73 (myb domain protein 73); DNA binding / transcription factor Myb_DNA-binding
AT4G37780.1 AtMYB87/MYB87 (myb domain protein 87); DNA binding / transcription factor Myb_DNA-binding
AT4G38620.1 MYB4 (myb domain protein 4); transcription factor Myb_DNA-binding
AT5G01200.1 myb family transcription factor Myb_DNA-binding
AT5G02320.1 MYB3R-5 (myb domain protein 3R-5); DNA binding / transcription factor Myb_DNA-binding
AT5G04760.1 myb family transcription factor Myb_DNA-binding
AT5G05790.1 myb family transcription factor Myb_DNA-binding
AT5G06100.1 ATMYB33/MYB33 (myb domain protein 33); DNA binding / transcription factor Myb_DNA-binding
AT5G06100.2 ATMYB33/MYB33 (myb domain protein 33); DNA binding / transcription factor Myb_DNA-binding
AT5G06100.3 ATMYB33/MYB33 (myb domain protein 33) Myb_DNA-binding
AT5G06110.1 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related DnaJ Myb_DNA-binding
AT5G07690.1 MYB29 (myb domain protein 29); DNA binding / transcription factor Myb_DNA-binding
AT5G07700.1 MYB76 (myb domain protein 76); DNA binding / transcription factor Myb_DNA-binding
AT5G08520.1 myb family transcription factor Myb_DNA-binding
AT5G10280.1 MYB92 (myb domain protein 92); DNA binding / transcription factor Myb_DNA-binding
AT5G11050.1 MYB64 (myb domain protein 64); DNA binding / transcription factor Myb_DNA-binding
AT5G11510.1 MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4); DNA binding / transcription coactivator/ transcription factor Myb_DNA-binding
AT5G11510.2 MYB3R-4 (C-MYB-LIKE TRANSCRIPTION FACTOR 3R-4, myb domain protein 3R-4); DNA binding / transcription factor Myb_DNA-binding
AT5G12870.1 AtMYB46/MYB46 (myb domain protein 46); DNA binding / transcription factor Myb_DNA-binding
AT5G14340.1 AtMYB40 (myb domain protein 40); DNA binding / transcription factor Myb_DNA-binding
AT5G14750.1 ATMYB66/WER/WER1 (WEREWOLF 1); DNA binding / protein binding / transcription factor/ transcription regulator Myb_DNA-binding
AT5G15310.1 AtMIXTA/AtMYB16 (myb domain protein 16); DNA binding / transcription factor Myb_DNA-binding
AT5G15310.2 AtMIXTA/AtMYB16 (myb domain protein 16) Myb_DNA-binding
AT5G16600.1 MYB43 (myb domain protein 43); DNA binding / transcription factor Myb_DNA-binding
AT5G16770.1 AtMYB9 (myb domain protein 9); DNA binding / transcription factor Myb_DNA-binding
AT5G16770.2 AtMYB9 (myb domain protein 9); DNA binding Myb_DNA-binding
AT5G17800.1 AtMYB56 (myb domain protein 56); DNA binding / transcription factor Myb_DNA-binding
AT5G23000.1 ATMYB37/MYB37/RAX1 (myb domain protein 37); DNA binding / transcription factor Myb_DNA-binding
AT5G23650.1 myb family transcription factor Myb_DNA-binding
AT5G26660.1 ATMYB4 (myb domain protein 4); transcription repressor Myb_DNA-binding
AT5G35550.1 TT2 (TRANSPARENT TESTA 2); DNA binding / transcription factor Myb_DNA-binding
AT5G39700.1 MYB89 (myb domain protein 89); DNA binding / transcription factor Myb_DNA-binding
AT5G40330.1 MYB23 (myb domain protein 23); DNA binding / transcription factor Myb_DNA-binding
AT5G40350.1 MYB24 (myb domain protein 24); DNA binding / transcription factor Myb_DNA-binding
AT5G40360.1 MYB115 (myb domain protein 115); DNA binding / transcription factor Myb_DNA-binding
AT5G40430.1 MYB22 (myb domain protein 22); DNA binding / transcription factor Myb_DNA-binding
AT5G45420.1 myb family transcription factor Myb_DNA-binding
AT5G49330.1 AtMYB111 (myb domain protein 111); DNA binding / transcription factor Myb_DNA-binding
AT5G49620.1 AtMYB78 (myb domain protein 78); DNA binding / transcription factor Myb_DNA-binding
AT5G52260.1 AtMYB19 (myb domain protein 19); DNA binding / transcription factor Myb_DNA-binding
AT5G52600.1 AtMYB82 (myb domain protein 82); DNA binding / transcription factor Myb_DNA-binding
AT5G54230.1 MYB49 (myb domain protein 49); transcription factor Myb_DNA-binding
AT5G55020.1 MYB120 (myb domain protein 120); DNA binding / transcription factor Myb_DNA-binding
AT5G56110.1 ATMYB103/ATMYB80/MS188/MYB103 (MYB DOMAIN PROTEIN 80); DNA binding / transcription factor Myb_DNA-binding
AT5G57620.1 MYB36 (myb domain protein 36); DNA binding / transcription factor Myb_DNA-binding
AT5G58850.1 MYB119 (myb domain protein 119); DNA binding / transcription factor Myb_DNA-binding
AT5G58900.1 myb family transcription factor Myb_DNA-binding
AT5G59780.3 MYB59 (myb domain protein 59); DNA binding / transcription factor Myb_DNA-binding
AT5G60890.1 ATMYB34/ATR1/MYB34 (ALTERED TRYPTOPHAN REGULATION, MYB DOMAIN PROTEIN 34); DNA binding / kinase/ transcription activator/ transcription factor Myb_DNA-binding
AT5G61420.2 MYB28 (MYB DOMAIN PROTEIN 28); DNA binding / transcription factor Myb_DNA-binding
AT5G62320.1 MYB99 (myb domain protein 99); DNA binding / transcription factor Myb_DNA-binding
AT5G62470.1 MYB96 (myb domain protein 96); DNA binding / transcription factor Myb_DNA-binding
AT5G62470.2 MYB96 (myb domain protein 96); DNA binding / transcription factor Myb_DNA-binding
AT5G65230.1 AtMYB53 (myb domain protein 53); DNA binding / transcription factor Myb_DNA-binding
AT5G65790.1 MYB68 (myb domain protein 68); DNA binding / transcription factor Myb_DNA-binding
AT5G67300.1 ATMYB44/ATMYBR1/MYBR1 (MYB DOMAIN PROTEIN 44); DNA binding / transcription factor Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608

Specific references

Stracke, R; Werber, M; Weisshaar, B. 2001. The R2R3-MYB gene family in Arabidopsis thaliana. Curr. Opin. Plant Biol. 4(5):447-56 PUBMEDID:11597504
Yanhui, C; Xiaoyuan, Y; Kun, H; Meihua, L; Jigang, L; Zhaofeng, G; Zhiqiang, L; Yunfei, Z; Xiaoxiao, W; Xiaoming, Q; Yunping, S; Li, Z; Xiaohui, D; Jingchu, L; Xing-Wang, D; Zhangliang, C; Hongya, G; Li-Jia, Q. 2006. The MYB Transcription Factor Superfamily of Arabidopsis: Expression Analysis and Phylogenetic Comparison with the Rice MYB Family. Plant Mol Biol 60(1):107-124 PUBMEDID:16463103