Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 127 gene models in this family



Gene modelDescriptionDomains
OsIBCD000203 Chr01_321,1053,,,1,1053, Myb_DNA-binding
OsIBCD000284 Chr01_452,885,,,1,885, Myb_DNA-binding
OsIBCD000461 Chr01_713,801,,,1,801, Myb_DNA-binding
OsIBCD000602 Chr01_898,882,,,1,882, Myb_DNA-binding
OsIBCD000825 Chr01_1220,2553,,,1,2553, Myb_DNA-binding
OsIBCD001147 Chr01_1680,864,,,1,864, Myb_DNA-binding
OsIBCD001214 Chr01_1781,1287,,,1,1287, Myb_DNA-binding
OsIBCD001337 Chr01_1964,954,,,1,954, Myb_DNA-binding
OsIBCD002190 Chr01_3506,1083,,,1,1083, Myb_DNA-binding
OsIBCD002191 Chr01_3507,873,,,1,873, Myb_DNA-binding
OsIBCD002940 Chr01_4617,957,,,1,957, Myb_DNA-binding
OsIBCD003008 Chr01_4714,828,,,1,828, Myb_DNA-binding
OsIBCD003042 Chr01_4760,909,,,1,909, Myb_DNA-binding
OsIBCD003079 Chr01_4811,924,,,1,924, Myb_DNA-binding
OsIBCD003159 Chr01_4933,897,,,1,897, Myb_DNA-binding
OsIBCD003667 Chr01_5657,1662,,,1,1662, Myb_DNA-binding
OsIBCD003843 Chr01_5912,1575,,,1,1575, Myb_DNA-binding
OsIBCD003895 Chr01_5993,1242,,,1,1242, Myb_DNA-binding
OsIBCD003916 Chr01_6026,900,,,1,900, Myb_DNA-binding
OsIBCD003925 Chr01_6047,1278,,,1,1278, Myb_DNA-binding
OsIBCD003964 Chr01_6109,522,,,1,522, Myb_DNA-binding
OsIBCD004037 Chr01_6225,864,,,1,864, Myb_DNA-binding
OsIBCD004688 Chr01_7113,831,,,1,831, Myb_DNA-binding
OsIBCD004820 Chr02_152,894,,,1,894, Myb_DNA-binding
OsIBCD006985 Chr02_3676,1029,,,1,1029, Myb_DNA-binding
OsIBCD007240 Chr02_4041,870,,,1,870, Myb_DNA-binding
OsIBCD007273 Chr02_4091,777,,,1,777, Myb_DNA-binding
OsIBCD007364 Chr02_4232,960,,,1,960, Myb_DNA-binding
OsIBCD007366 Chr02_4234,903,,,1,903, Myb_DNA-binding
OsIBCD007637 Chr02_4659,1035,,,1,1035, Myb_DNA-binding
OsIBCD007874 Chr02_4993,1161,,,1,1161, Myb_DNA-binding
OsIBCD008009 Chr02_5173,1134,,,1,1134, Myb_DNA-binding
OsIBCD008199 Chr02_5450,1020,,,1,1020, Myb_DNA-binding
OsIBCD008832 Chr03_418,747,,,1,747, Myb_DNA-binding
OsIBCD009406 Chr03_1199,1023,,,1,1023, Myb_DNA-binding
OsIBCD009799 Chr03_1765,921,,,1,921, Myb_DNA-binding
OsIBCD009848 Chr03_1834,996,,,1,996, Myb_DNA-binding P_C
OsIBCD009931 Chr03_1952,984,,,1,984, Myb_DNA-binding
OsIBCD010315 Chr03_2500,1185,,,1,1185, Myb_DNA-binding
OsIBCD010410 Chr03_2648,993,,,1,993, Myb_DNA-binding
OsIBCD011820 Chr03_5153,738,,,1,738, Myb_DNA-binding
OsIBCD011821 Chr03_5154,738,,,1,738, Myb_DNA-binding
OsIBCD012100 Chr03_5540,966,,,1,966, Myb_DNA-binding
OsIBCD013894 Chr04_2102,1980,,,1,1980, Myb_DNA-binding
OsIBCD014572 Chr04_3144,1038,,,1,1038, Myb_DNA-binding
OsIBCD014655 Chr04_3256,1110,,,1,1110, Myb_DNA-binding
OsIBCD014926 Chr04_3630,846,,,1,846, Myb_DNA-binding
OsIBCD014983 Chr04_3711,747,,,1,747, Myb_DNA-binding
OsIBCD015070 Chr04_3843,822,,,1,822, Myb_DNA-binding
OsIBCD015073 Chr04_3847,765,,,1,765, Myb_DNA-binding
OsIBCD015177 Chr04_3995,1032,,,1,1032, Myb_DNA-binding
OsIBCD015423 Chr04_4384,1023,,,1,1023, Myb_DNA-binding
OsIBCD015431 Chr04_4393,1113,,,1,1113, Myb_DNA-binding
OsIBCD016009 Chr04_5164,963,,,1,963, Myb_DNA-binding
OsIBCD016231 Chr05_135,837,,,1,837, Myb_DNA-binding
OsIBCD016306 Chr05_242,4992,,,1,4992, Myb_DNA-binding
OsIBCD016352 Chr05_312,966,,,1,966, Myb_DNA-binding
OsIBCD016395 Chr05_376,1284,,,1,1284, Myb_DNA-binding
OsIBCD017622 Chr05_2616,1131,,,1,1131, Myb_DNA-binding
OsIBCD017623 Chr05_2617,453,,,1,453, Myb_DNA-binding
OsIBCD018104 Chr05_3337,783,,,1,783, Myb_DNA-binding
OsIBCD018171 Chr05_3449,546,,,1,546, Myb_DNA-binding
OsIBCD018172 Chr05_3450,549,,,1,549, Myb_DNA-binding
OsIBCD018206 Chr05_3502,945,,,1,945, Myb_DNA-binding
OsIBCD018269 Chr05_3593,1785,,,1,1785, Myb_DNA-binding
OsIBCD018450 Chr05_3866,1185,,,1,1185, Myb_DNA-binding
OsIBCD018821 Chr05_4413,870,,,1,870, Myb_DNA-binding
OsIBCD018922 Chr05_4551,750,,,1,750, Myb_DNA-binding
OsIBCD019170 Chr06_111,987,,,1,987, Myb_DNA-binding
OsIBCD019177 Chr06_119,1104,,,1,1104, Myb_DNA-binding
OsIBCD019515 Chr06_638,1332,,,1,1332, Myb_DNA-binding
OsIBCD019867 Chr06_1152,963,,,1,963, Myb_DNA-binding
OsIBCD020061 Chr06_1449,837,,,1,837, Myb_DNA-binding
OsIBCD021789 Chr06_4439,1086,,,1,1086, Myb_DNA-binding
OsIBCD022308 Chr07_336,2907,,,1,2907, Myb_DNA-binding
OsIBCD022773 Chr07_1072,1326,,,1,1326, Myb_DNA-binding
OsIBCD022880 Chr07_1265,990,,,1,990, Myb_DNA-binding
OsIBCD023520 Chr07_2530,1206,,,1,1206, Myb_DNA-binding
OsIBCD023878 Chr07_3063,1107,,,1,1107, Myb_DNA-binding
OsIBCD024264 Chr07_3662,1614,,,1,1614, Myb_DNA-binding
OsIBCD024278 Chr07_3678,1026,,,1,1026, Myb_DNA-binding
OsIBCD024305 Chr07_3721,1038,,,1,1038, Myb_DNA-binding
OsIBCD024656 Chr07_4209,897,,,1,897, Myb_DNA-binding
OsIBCD024991 Chr08_438,1080,,,1,1080, Myb_DNA-binding
OsIBCD025603 Chr08_1456,951,,,1,951, Myb_DNA-binding
OsIBCD026579 Chr08_3261,930,,,1,930, Myb_DNA-binding
OsIBCD026612 Chr08_3308,1074,,,1,1074, Myb_DNA-binding
OsIBCD026626 Chr08_3329,1110,,,1,1110, Myb_DNA-binding
OsIBCD026635 Chr08_3341,501,,,1,501, Myb_DNA-binding
OsIBCD026637 Chr08_3343,930,,,1,930, Myb_DNA-binding
OsIBCD026910 Chr08_3799,891,,,1,891, Myb_DNA-binding
OsIBCD027316 Chr08_4392,789,,,1,789, Myb_DNA-binding
OsIBCD027324 Chr08_4401,732,,,1,732, Myb_DNA-binding
OsIBCD027326 Chr08_4403,573,,,1,573, Myb_DNA-binding
OsIBCD028490 Chr09_1897,840,,,1,840, Myb_DNA-binding
OsIBCD028543 Chr09_1968,963,,,1,963, Myb_DNA-binding
OsIBCD028642 Chr09_2113,1134,,,1,1134, Myb_DNA-binding
OsIBCD028679 Chr09_2174,1968,,,1,1968, Aa_trans Myb_DNA-binding
OsIBCD029212 Chr09_2973,858,,,1,858, Myb_DNA-binding
OsIBCD029250 Chr09_3016,756,,,1,756, Myb_DNA-binding
OsIBCD030214 Chr10_1337,1020,,,1,1020, Myb_DNA-binding
OsIBCD030967 Chr10_2544,843,,,1,843, Myb_DNA-binding
OsIBCD031107 Chr10_2758,885,,,1,885, Myb_DNA-binding
OsIBCD031718 Chr11_192,927,,,1,927, Myb_DNA-binding
OsIBCD032032 Chr11_672,786,,,1,786, Myb_DNA-binding
OsIBCD032138 Chr11_853,804,,,1,804, Myb_DNA-binding
OsIBCD033186 Chr11_2671,993,,,1,993, Myb_DNA-binding
OsIBCD033706 Chr11_3477,714,,,1,714, Myb_DNA-binding
OsIBCD033921 Chr12_258,936,,,1,936, Myb_DNA-binding
OsIBCD034202 Chr12_687,1137,,,1,1137, Myb_DNA-binding
OsIBCD034481 Chr12_1124,3243,,,1,3243, Myb_DNA-binding
OsIBCD034508 Chr12_1170,624,,,1,624, Myb_DNA-binding
OsIBCD035141 Chr12_2376,1230,,,1,1230, Myb_DNA-binding
OsIBCD035359 Chr12_2697,903,,,1,903, Myb_DNA-binding
OsIBCD035384 Chr12_2731,1014,,,1,1014, Myb_DNA-binding
OsIBCD035410 Chr12_2777,654,,,1,654, Myb_DNA-binding
OsIBCD037267 Chr01_7130,753,,,1,753, Myb_DNA-binding
OsIBCD038207 Chr02_4906,849,,,1,849, Myb_DNA-binding
OsIBCD038618 Chr03_1198,729,,,1,729, Myb_DNA-binding
OsIBCD038884 Chr03_2566,924,,,1,924, Myb_DNA-binding
OsIBCD040047 Chr04_2384,795,,,1,795, Myb_DNA-binding
OsIBCD041881 Chr06_1452,534,,,1,534, Myb_DNA-binding
OsIBCD042348 Chr06_4035,936,,,1,936, Myb_DNA-binding
OsIBCD042938 Chr07_1997,579,,,1,579, Myb_DNA-binding
OsIBCD043504 Chr08_531,963,,,1,963, Myb_DNA-binding
OsIBCD043988 Chr08_3463,603,,,1,603, Myb_DNA-binding
OsIBCD044250 Chr09_56,957,,,1,957, Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608