Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 127 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g03720.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g04930.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g07450.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os01g09590.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os01g12860.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g16810.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g18240.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g19330.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g19970.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g36460.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g45090.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g49160.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g50110.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g50720.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g51260.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g52410.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os01g59660.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g59660.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g59660.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g59660.4 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g62410.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g62410.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g63160.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g63460.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g63680.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g64360.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g65370.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os01g74410.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g74590.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g02370.1 myb-like DNA-binding domain containing protein, putative Myb_DNA-binding
LOC_Os02g09480.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os02g36890.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g40530.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g41510.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g42850.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g42870.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g46780.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g49250.1 myb-like DNA-binding domain containing protein Myb_DNA-binding
LOC_Os02g49986.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g51799.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os02g54520.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g04900.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g13310.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g18480.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g19120.1 MYB family transcription factor, putative Myb_DNA-binding P_C
LOC_Os03g20090.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g25550.1 myb-like DNA-binding domain containing protein, putative Myb_DNA-binding
LOC_Os03g26130.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g27090.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g29614.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os03g38210.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g51110.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g56090.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g28090.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g38740.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g39470.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g42950.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g43680.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g45020.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g45060.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os04g46384.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os04g50680.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g50770.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g03550.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g04210.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g04820.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g28320.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os05g35500.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g37060.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g37730.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g38460.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g41166.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g46610.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os05g48010.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g49310.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os06g02250.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os06g06740.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g10350.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g11780.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os06g14670.1 ODORANT1, putative, expressed Myb_DNA-binding
LOC_Os06g40330.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g43090.1 MYB transcription factor TaMYB1, putative, expressed Myb_DNA-binding
LOC_Os06g46560.1 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os07g04700.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g04700.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g04700.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g04700.5 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g04700.6 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g12130.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g14110.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os07g31470.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g37210.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g43420.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g43580.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g44090.3 myb-related protein Hv33, putative, expressed Myb_DNA-binding
LOC_Os07g48870.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g05520.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os08g15020.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g33150.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g33660.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g33800.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os08g33940.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g34960.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os08g37970.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g43550.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os09g01960.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os09g23620.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os09g24800.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os09g26170.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os09g36250.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os09g36730.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os10g33810.1 myb-related protein Myb4, putative, expressed Myb_DNA-binding
LOC_Os10g35660.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os11g03440.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os11g07890.1 transposon protein, putative, CACTA, En/Spm sub-class, expressed Myb_DNA-binding Peptidase_C48 Transposase_21
LOC_Os11g10130.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os11g35390.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os11g45740.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os11g47460.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g03150.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os12g07610.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os12g07640.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g13570.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g33070.1 myb-like DNA-binding domain containing protein, putative, expressed Myb_DNA-binding
LOC_Os12g37690.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g37970.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g38400.2 MYB family transcription factor, putative, expressed Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608

Specific references

Gubler, F; Watts, RJ; Kalla, R; Matthews, P; Keys, M; Jacobsen, JV. 1997. Cloning of a rice cDNA encoding a transcription factor homologous to barley GAMyb. Plant Cell Physiol. 38(3):362-5 PUBMEDID:9150608
Jia, L; Clegg, MT; Jiang, T. 2004. Evolutionary dynamics of the DNA-binding domains in putative R2R3-MYB genes identified from rice subspecies indica and japonica genomes. Plant Physiol. 134(2):575-85 PUBMEDID:14966247
Lee, MW; Qi, M; Yang, Y. 2001. A novel jasmonic acid-inducible rice myb gene associates with fungal infection and host cell death. Mol. Plant Microbe Interact. 14(4):527-35 PUBMEDID:11310740
Lu, CA; Ho, TH; Ho, SL; Yu, SM. 2002. Three novel MYB proteins with one DNA binding repeat mediate sugar and hormone regulation of alpha-amylase gene expression. Plant Cell 14(8):1963-80 PUBMEDID:12172034
Yanhui, C; Xiaoyuan, Y; Kun, H; Meihua, L; Jigang, L; Zhaofeng, G; Zhiqiang, L; Yunfei, Z; Xiaoxiao, W; Xiaoming, Q; Yunping, S; Li, Z; Xiaohui, D; Jingchu, L; Xing-Wang, D; Zhangliang, C; Hongya, G; Li-Jia, Q. 2006. The MYB Transcription Factor Superfamily of Arabidopsis: Expression Analysis and Phylogenetic Comparison with the Rice MYB Family. Plant Mol Biol 60(1):107-124 PUBMEDID:16463103