Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 62 gene models in this family



Gene modelDescriptionDomains
100368 fgenesh1_pg.scaffold_420000003 Myb_DNA-binding
113218 e_gw1.6.239.1 Myb_DNA-binding
114045 e_gw1.9.342.1 Myb_DNA-binding
118391 e_gw1.24.66.1 Myb_DNA-binding
121437 e_gw1.36.4.1 Myb_DNA-binding
122419 e_gw1.39.24.1 Myb_DNA-binding
123475 e_gw1.45.189.1 Myb_DNA-binding
123689 e_gw1.46.242.1 Myb_DNA-binding
125088 e_gw1.53.214.1 Myb_DNA-binding
12554 gw1.52.25.1 Myb_DNA-binding
126855 e_gw1.61.201.1 Myb_DNA-binding
128885 e_gw1.72.10.1 Myb_DNA-binding
131930 e_gw1.91.11.1 Myb_DNA-binding
133834 e_gw1.106.133.1 Myb_DNA-binding
135480 e_gw1.120.1.1 Myb_DNA-binding
137906 e_gw1.141.66.1 Myb_DNA-binding
143587 e_gw1.204.95.1 Myb_DNA-binding
143649 e_gw1.206.56.1 Myb_DNA-binding
144109 e_gw1.211.99.1 Myb_DNA-binding
144766 e_gw1.219.38.1 Myb_DNA-binding
147199 e_gw1.256.18.1 Myb_DNA-binding
148816 e_gw1.284.46.1 Myb_DNA-binding
150459 e_gw1.317.17.1 Myb_DNA-binding
151013 e_gw1.326.5.1 Myb_DNA-binding
153179 e_gw1.389.9.1 Myb_DNA-binding
16221 gw1.106.41.1 Myb_DNA-binding
167320 estExt_fgenesh1_pg.C_1430028 Myb_DNA-binding
167323 estExt_fgenesh1_pg.C_1430031 Myb_DNA-binding
167888 estExt_fgenesh1_pg.C_1600028 Myb_DNA-binding
17294 gw1.200.30.1 Myb_DNA-binding
173907 estExt_gwp_gw1.C_20043 Myb_DNA-binding
184923 estExt_gwp_gw1.C_780109 Myb_DNA-binding
189058 estExt_gwp_gw1.C_1280005 DnaJ Myb_DNA-binding
189472 estExt_gwp_gw1.C_1330076 Myb_DNA-binding
19381 gw1.149.61.1 Myb_DNA-binding
206991 estExt_Genewise1.C_360117 Myb_DNA-binding
226091 estExt_Genewise1.C_3440013 DnaJ Myb_DNA-binding
228394 estExt_Genewise1.C_6410001 Myb_DNA-binding
233852 estExt_fgenesh2_pg.C_1080026 Myb_DNA-binding
233855 estExt_fgenesh2_pg.C_1080031 Myb_DNA-binding
26829 gw1.13.182.1 Myb_DNA-binding
27442 gw1.257.52.1 Myb_DNA-binding
29378 gw1.313.37.1 Myb_DNA-binding
34929 gw1.433.32.1 Myb_DNA-binding
36815 gw1.65.181.1 Myb_DNA-binding
37293 gw1.66.160.1 Myb_DNA-binding
37294 gw1.238.44.1 Myb_DNA-binding
37391 gw1.114.172.1 Myb_DNA-binding
49022 gw1.16.238.1 Myb_DNA-binding
49308 gw1.186.56.1 Myb_DNA-binding
49319 gw1.103.84.1 Myb_DNA-binding
5621 gw1.295.9.1 Myb_DNA-binding
59175 fgenesh1_pm.scaffold_150000001 DnaJ Myb_DNA-binding
61394 fgenesh1_pm.scaffold_371000001 Myb_DNA-binding
64527 fgenesh1_pg.scaffold_2000404 Myb_DNA-binding
76816 fgenesh1_pg.scaffold_61000017 Myb_DNA-binding
8210 gw1.2.29.1 Myb_DNA-binding
8239 gw1.76.8.1 Myb_DNA-binding
8318 gw1.74.13.1 Myb_DNA-binding
8347 gw1.10.6.1 Myb_DNA-binding
8874 gw1.277.32.1 Myb_DNA-binding
89855 fgenesh1_pg.scaffold_189000016 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608