Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 213 gene models in this family



Gene modelDescriptionDomains
172369 gw1.I.969.1 Myb_DNA-binding
172406 gw1.I.1006.1 Myb_DNA-binding
172947 gw1.I.1547.1 Myb_DNA-binding
173219 gw1.I.1819.1 Myb_DNA-binding
173902 gw1.I.2502.1 Myb_DNA-binding
177626 gw1.I.6226.1 Myb_DNA-binding
177847 gw1.I.6447.1 Myb_DNA-binding
178285 gw1.I.6885.1 Myb_DNA-binding
179558 gw1.I.8158.1 Myb_DNA-binding
179847 gw1.I.8447.1 Myb_DNA-binding
180236 gw1.I.8836.1 Myb_DNA-binding
180750 gw1.I.9350.1 Myb_DNA-binding
181101 gw1.I.9701.1 Myb_DNA-binding
195127 gw1.IV.216.1 Myb_DNA-binding
195227 gw1.IV.316.1 Myb_DNA-binding
196914 gw1.IV.2003.1 Myb_DNA-binding
197101 gw1.IV.2190.1 Myb_DNA-binding
198541 gw1.IV.3630.1 Myb_DNA-binding
201887 gw1.IX.2352.1 Myb_DNA-binding
202828 gw1.IX.3293.1 Myb_DNA-binding
203071 gw1.IX.3536.1 Myb_DNA-binding
203373 gw1.IX.3838.1 Myb_DNA-binding
203876 gw1.IX.4341.1 Myb_DNA-binding
204135 gw1.IX.4600.1 Myb_DNA-binding
204506 gw1.IX.4971.1 Myb_DNA-binding
207059 gw1.V.2460.1 Myb_DNA-binding
207390 gw1.V.2791.1 Myb_DNA-binding
208067 gw1.V.3468.1 Myb_DNA-binding
208748 gw1.V.4149.1 Myb_DNA-binding
209497 gw1.V.4898.1 Myb_DNA-binding
217136 gw1.VII.1441.1 Myb_DNA-binding
217476 gw1.VII.1781.1 Myb_DNA-binding
218006 gw1.VII.2311.1 Myb_DNA-binding
218492 gw1.VII.2797.1 Myb_DNA-binding
225473 gw1.X.170.1 Myb_DNA-binding
225837 gw1.X.534.1 Myb_DNA-binding
225994 gw1.X.691.1 Myb_DNA-binding
226354 gw1.X.1051.1 Myb_DNA-binding
226398 gw1.X.1095.1 Myb_DNA-binding
226611 gw1.X.1308.1 Myb_DNA-binding
227216 gw1.X.1913.1 Myb_DNA-binding
228694 gw1.X.3391.1 Myb_DNA-binding
228988 gw1.X.3685.1 Myb_DNA-binding
234179 gw1.XI.2159.1 Myb_DNA-binding
234206 gw1.XI.2186.1 Myb_DNA-binding
234214 gw1.XI.2194.1 Myb_DNA-binding
234218 gw1.XI.2198.1 Myb_DNA-binding
239772 gw1.XIII.21.1 Myb_DNA-binding
239787 gw1.XIII.36.1 Myb_DNA-binding
239794 gw1.XIII.43.1 Myb_DNA-binding
241716 gw1.XIII.1965.1 Myb_DNA-binding
241723 gw1.XIII.1972.1 Myb_DNA-binding
241997 gw1.XIII.2246.1 Myb_DNA-binding
242022 gw1.XIII.2271.1 Myb_DNA-binding
244349 gw1.XIV.1092.1 Myb_DNA-binding
245319 gw1.XIV.2062.1 Myb_DNA-binding
245627 gw1.XIV.2370.1 Myb_DNA-binding
247864 gw1.XIX.264.1 Myb_DNA-binding
248113 gw1.XIX.513.1 Myb_DNA-binding
248127 gw1.XIX.527.1 Myb_DNA-binding
248514 gw1.XIX.914.1 Myb_DNA-binding
248702 gw1.XIX.1102.1 Myb_DNA-binding
248709 gw1.XIX.1109.1 Myb_DNA-binding
248823 gw1.XIX.1223.1 Myb_DNA-binding
250508 gw1.XIX.2908.1 Myb_DNA-binding
250512 gw1.XIX.2912.1 Myb_DNA-binding
250515 gw1.XIX.2915.1 Myb_DNA-binding
250543 gw1.XIX.2943.1 Myb_DNA-binding
251300 gw1.XV.736.1 Myb_DNA-binding
251477 gw1.XV.913.1 Myb_DNA-binding
251828 gw1.XV.1264.1 Myb_DNA-binding
252056 gw1.XV.1492.1 Myb_DNA-binding
252061 gw1.XV.1497.1 Myb_DNA-binding
252120 gw1.XV.1556.1 Myb_DNA-binding
252266 gw1.XV.1702.1 Myb_DNA-binding
253496 gw1.XV.2932.1 Myb_DNA-binding
253888 gw1.XV.3324.1 Myb_DNA-binding
253893 gw1.XV.3329.1 Myb_DNA-binding
257228 gw1.XVI.3167.1 Myb_DNA-binding
258800 gw1.XVII.791.1 Myb_DNA-binding
259077 gw1.XVII.1068.1 Myb_DNA-binding
259170 gw1.XVII.1161.1 Myb_DNA-binding
259196 gw1.XVII.1187.1 Myb_DNA-binding
259595 gw1.XVIII.136.1 Myb_DNA-binding
260211 gw1.XVIII.752.1 Myb_DNA-binding
260463 gw1.XVIII.1004.1 Myb_DNA-binding
260467 gw1.XVIII.1008.1 Myb_DNA-binding
262338 gw1.XVIII.2879.1 Myb_DNA-binding
263090 gw1.1023.1.1 Myb_DNA-binding
265842 gw1.122.261.1 Myb_DNA-binding
266161 gw1.123.183.1 Myb_DNA-binding
267108 gw1.127.114.1 Myb_DNA-binding
269222 gw1.135.37.1 Myb_DNA-binding
270029 gw1.140.74.1 Myb_DNA-binding
270536 gw1.142.59.1 Myb_DNA-binding
271563 gw1.147.131.1 Myb_DNA-binding
272994 gw1.155.76.1 Myb_DNA-binding
273997 gw1.163.31.1 Myb_DNA-binding
275437 gw1.171.75.1 Myb_DNA-binding
277162 gw1.193.12.1 Myb_DNA-binding
282170 gw1.28.744.1 Myb_DNA-binding
282220 gw1.28.794.1 Myb_DNA-binding
284157 gw1.303.11.1 Myb_DNA-binding
286841 gw1.40.601.1 Myb_DNA-binding
295618 gw1.7448.1.1 Myb_DNA-binding
297580 gw1.8638.7.1 Myb_DNA-binding
299022 gw1.97.185.1 Myb_DNA-binding
408689 gw1.II.24.1 Myb_DNA-binding
408738 gw1.II.73.1 Myb_DNA-binding
408744 gw1.II.79.1 Myb_DNA-binding
408761 gw1.II.96.1 Myb_DNA-binding
409451 gw1.II.786.1 Myb_DNA-binding
410086 gw1.II.1421.1 Myb_DNA-binding
411017 gw1.II.2352.1 Myb_DNA-binding
411019 gw1.II.2354.1 Myb_DNA-binding
411200 gw1.II.2535.1 Myb_DNA-binding
411204 gw1.II.2539.1 Myb_DNA-binding
411205 gw1.II.2540.1 Myb_DNA-binding
412097 gw1.II.3432.1 Myb_DNA-binding
412635 gw1.II.3970.1 Myb_DNA-binding
412924 gw1.III.27.1 Myb_DNA-binding
412938 gw1.III.41.1 Myb_DNA-binding
413758 gw1.III.861.1 Myb_DNA-binding
414768 gw1.III.1871.1 Myb_DNA-binding
414911 gw1.III.2014.1 Myb_DNA-binding
414997 gw1.III.2100.1 Myb_DNA-binding
415374 gw1.III.2477.1 Myb_DNA-binding
415410 gw1.III.2513.1 Myb_DNA-binding
415416 gw1.III.2519.1 Myb_DNA-binding
415732 gw1.VI.105.1 Myb_DNA-binding
415884 gw1.VI.257.1 Myb_DNA-binding
417222 gw1.VI.1595.1 Myb_DNA-binding
419568 gw1.VIII.996.1 Myb_DNA-binding
420643 gw1.VIII.2071.1 Myb_DNA-binding
421128 gw1.VIII.2556.1 Myb_DNA-binding
421324 gw1.VIII.2752.1 Myb_DNA-binding
421454 gw1.VIII.2882.1 Myb_DNA-binding
421563 gw1.XII.23.1 Myb_DNA-binding
421622 gw1.XII.82.1 Myb_DNA-binding
421872 gw1.XII.332.1 Myb_DNA-binding
421873 gw1.XII.333.1 Myb_DNA-binding
421999 gw1.XII.459.1 Myb_DNA-binding
422640 gw1.XII.1100.1 Myb_DNA-binding
423254 gw1.XII.1714.1 Myb_DNA-binding
423963 gw1.29.475.1 Myb_DNA-binding
424037 gw1.57.4.1 Myb_DNA-binding
424157 gw1.57.124.1 Myb_DNA-binding
552946 eugene3.00002261 Myb_DNA-binding
554534 eugene3.00031167 Myb_DNA-binding
555116 eugene3.00031749 DnaJ Myb_DNA-binding
556142 eugene3.00040855 Myb_DNA-binding
556366 eugene3.00041079 Myb_DNA-binding
557085 eugene3.00090345 Myb_DNA-binding
559321 eugene3.00050936 Myb_DNA-binding
560884 eugene3.00060843 Myb_DNA-binding
561783 eugene3.00061742 Myb_DNA-binding
562189 eugene3.00070127 Myb_DNA-binding
564542 eugene3.00081137 Myb_DNA-binding
566512 eugene3.00101070 Myb_DNA-binding
567580 eugene3.00102138 Myb_DNA-binding
569401 eugene3.00120054 Myb_DNA-binding
571093 eugene3.00130457 Myb_DNA-binding
574261 eugene3.00190735 Myb_DNA-binding
581592 eugene3.01310019 Myb_DNA-binding
582403 eugene3.13810002 Myb_DNA-binding
592009 eugene3.00400354 Myb_DNA-binding
594615 eugene3.00640203 Myb_DNA-binding
642041 grail3.0017024101 Myb_DNA-binding
644073 grail3.0033008701 Myb_DNA-binding
650862 grail3.0026024601 Myb_DNA-binding
656198 grail3.0049028801 Myb_DNA-binding
659565 grail3.0022016501 Myb_DNA-binding
668851 grail3.0007008701 Myb_DNA-binding
678131 grail3.0041008501 Myb_DNA-binding
705907 estExt_Genewise1_v1.C_LG_I0681 Myb_DNA-binding
710397 estExt_Genewise1_v1.C_LG_II1523 Myb_DNA-binding
714142 estExt_Genewise1_v1.C_LG_IV3558 Myb_DNA-binding
717084 estExt_Genewise1_v1.C_LG_VI0902 Myb_DNA-binding
718027 estExt_Genewise1_v1.C_LG_VII0061 Myb_DNA-binding
719990 estExt_Genewise1_v1.C_LG_VIII0391 Myb_DNA-binding
720191 estExt_Genewise1_v1.C_LG_VIII0804 Myb_DNA-binding
731056 estExt_Genewise1_v1.C_LG_XIV1165 Myb_DNA-binding
752657 fgenesh4_pg.C_LG_I002260 Myb_DNA-binding
754504 fgenesh4_pg.C_LG_II000684 Myb_DNA-binding
761334 fgenesh4_pg.C_LG_V001386 Myb_DNA-binding
766132 fgenesh4_pg.C_LG_VIII001146 Myb_DNA-binding
768927 fgenesh4_pg.C_LG_X000417 Myb_DNA-binding
769367 fgenesh4_pg.C_LG_X000857 Myb_DNA-binding
772945 fgenesh4_pg.C_LG_XII000720 Myb_DNA-binding
774521 fgenesh4_pg.C_LG_XIV000431 Myb_DNA-binding
774668 fgenesh4_pg.C_LG_XIV000578 Myb_DNA-binding
775912 fgenesh4_pg.C_LG_XV000340 Myb_DNA-binding
778373 fgenesh4_pg.C_LG_XVII000252 Myb_DNA-binding
797707 fgenesh4_pm.C_LG_I000710 Myb_DNA-binding
797859 fgenesh4_pm.C_LG_I000862 Myb_DNA-binding
798952 fgenesh4_pm.C_LG_II000641 Myb_DNA-binding
799038 fgenesh4_pm.C_LG_II000727 Myb_DNA-binding
799234 fgenesh4_pm.C_LG_II000923 Myb_DNA-binding
801938 fgenesh4_pm.C_LG_VI000285 Myb_DNA-binding
803466 fgenesh4_pm.C_LG_VIII000421 Myb_DNA-binding
803692 fgenesh4_pm.C_LG_VIII000647 Myb_DNA-binding
803780 fgenesh4_pm.C_LG_VIII000735 Myb_DNA-binding
806707 fgenesh4_pm.C_LG_XIII000007 Myb_DNA-binding
809944 fgenesh4_pm.C_scaffold_40000020 Myb_DNA-binding
811245 fgenesh4_pm.C_scaffold_134000008 Myb_DNA-binding
816086 estExt_fgenesh4_pg.C_LG_II0354 Myb_DNA-binding
818190 estExt_fgenesh4_pg.C_LG_IV1453 Myb_DNA-binding
820268 estExt_fgenesh4_pg.C_LG_VIII0326 Myb_DNA-binding
821499 estExt_fgenesh4_pg.C_LG_IX1149 Myb_DNA-binding
825691 estExt_fgenesh4_pg.C_LG_XVIII0304 Myb_DNA-binding
829275 estExt_fgenesh4_pg.C_169840001 Myb_DNA-binding
829311 estExt_fgenesh4_pm.C_LG_I0066 DnaJ Myb_DNA-binding
831892 estExt_fgenesh4_pm.C_LG_VI0283 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608