Plant Transcription factor database - Universität Potsdam
version: 3.0

Vitis vinifera MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 130 gene models in this family



Gene modelDescriptionDomains
GSVIVP00000055001 Myb_DNA-binding
GSVIVP00000609001 Myb_DNA-binding
GSVIVP00000629001 Myb_DNA-binding
GSVIVP00001115001 Myb_DNA-binding
GSVIVP00001720001 Myb_DNA-binding
GSVIVP00002010001 Myb_DNA-binding
GSVIVP00002107001 Myb_DNA-binding
GSVIVP00002219001 Myb_DNA-binding
GSVIVP00002546001 Myb_DNA-binding
GSVIVP00002580001 Myb_DNA-binding
GSVIVP00002700001 Myb_DNA-binding
GSVIVP00003803001 Myb_DNA-binding
GSVIVP00003904001 Myb_DNA-binding
GSVIVP00005413001 Myb_DNA-binding
GSVIVP00006679001 Myb_DNA-binding
GSVIVP00007128001 Myb_DNA-binding
GSVIVP00007276001 Myb_DNA-binding
GSVIVP00008477001 Myb_DNA-binding
GSVIVP00009522001 Myb_DNA-binding
GSVIVP00010034001 Myb_DNA-binding
GSVIVP00010499001 Myb_DNA-binding
GSVIVP00010501001 Myb_DNA-binding
GSVIVP00012781001 Myb_DNA-binding
GSVIVP00013087001 Myb_DNA-binding
GSVIVP00013648001 Myb_DNA-binding
GSVIVP00013992001 Myb_DNA-binding
GSVIVP00013994001 Myb_DNA-binding
GSVIVP00013995001 Myb_DNA-binding
GSVIVP00013998001 Myb_DNA-binding
GSVIVP00014316001 Myb_DNA-binding
GSVIVP00014754001 Myb_DNA-binding
GSVIVP00014887001 Myb_DNA-binding
GSVIVP00015010001 Myb_DNA-binding
GSVIVP00015233001 Myb_DNA-binding
GSVIVP00015729001 Myb_DNA-binding
GSVIVP00016004001 Myb_DNA-binding
GSVIVP00016065001 Myb_DNA-binding
GSVIVP00016076001 Myb_DNA-binding
GSVIVP00016311001 Myb_DNA-binding
GSVIVP00016337001 Myb_DNA-binding
GSVIVP00016469001 Myb_DNA-binding
GSVIVP00016726001 Myb_DNA-binding
GSVIVP00016944001 Myb_DNA-binding
GSVIVP00016947001 Myb_DNA-binding
GSVIVP00017281001 Myb_DNA-binding
GSVIVP00017631001 Myb_DNA-binding
GSVIVP00017698001 Myb_DNA-binding
GSVIVP00017792001 Myb_DNA-binding
GSVIVP00017797001 Myb_DNA-binding
GSVIVP00017798001 Myb_DNA-binding
GSVIVP00017891001 Myb_DNA-binding
GSVIVP00018224001 Myb_DNA-binding
GSVIVP00018305001 Myb_DNA-binding
GSVIVP00019129001 Myb_DNA-binding
GSVIVP00019566001 Myb_DNA-binding
GSVIVP00019744001 Myb_DNA-binding
GSVIVP00020265001 Myb_DNA-binding
GSVIVP00020267001 Myb_DNA-binding
GSVIVP00020377001 Myb_DNA-binding
GSVIVP00020581001 Myb_DNA-binding
GSVIVP00020709001 Myb_DNA-binding
GSVIVP00020719001 Myb_DNA-binding
GSVIVP00020733001 Myb_DNA-binding
GSVIVP00020833001 Myb_DNA-binding
GSVIVP00020968001 Myb_DNA-binding
GSVIVP00020990001 Myb_DNA-binding
GSVIVP00021000001 Myb_DNA-binding
GSVIVP00021123001 Myb_DNA-binding
GSVIVP00021320001 Myb_DNA-binding
GSVIVP00021322001 Myb_DNA-binding
GSVIVP00021430001 Myb_DNA-binding
GSVIVP00021473001 Myb_DNA-binding
GSVIVP00022176001 Myb_DNA-binding
GSVIVP00022367001 Myb_DNA-binding
GSVIVP00022409001 Myb_DNA-binding
GSVIVP00022415001 Myb_DNA-binding
GSVIVP00022423001 Myb_DNA-binding
GSVIVP00022504001 Myb_DNA-binding
GSVIVP00024139001 Myb_DNA-binding
GSVIVP00024157001 Myb_DNA-binding
GSVIVP00024392001 Myb_DNA-binding
GSVIVP00024611001 Myb_DNA-binding
GSVIVP00024797001 Myb_DNA-binding
GSVIVP00025459001 Myb_DNA-binding
GSVIVP00025883001 Myb_DNA-binding
GSVIVP00026803001 Myb_DNA-binding
GSVIVP00027308001 Myb_DNA-binding
GSVIVP00027577001 Myb_DNA-binding
GSVIVP00028082001 Myb_DNA-binding
GSVIVP00028163001 Myb_DNA-binding
GSVIVP00028224001 Myb_DNA-binding
GSVIVP00028596001 Myb_DNA-binding
GSVIVP00029213001 Myb_DNA-binding
GSVIVP00029219001 Myb_DNA-binding
GSVIVP00029221001 Myb_DNA-binding
GSVIVP00029323001 Myb_DNA-binding
GSVIVP00030107001 Myb_DNA-binding
GSVIVP00030360001 Myb_DNA-binding
GSVIVP00030469001 Myb_DNA-binding
GSVIVP00031433001 Myb_DNA-binding
GSVIVP00032264001 Myb_DNA-binding
GSVIVP00032265001 Myb_DNA-binding
GSVIVP00032268001 Myb_DNA-binding
GSVIVP00032269001 Myb_DNA-binding
GSVIVP00032272001 Myb_DNA-binding
GSVIVP00032465001 Myb_DNA-binding
GSVIVP00032467001 Myb_DNA-binding
GSVIVP00032972001 Myb_DNA-binding
GSVIVP00033103001 Myb_DNA-binding
GSVIVP00033189001 Myb_DNA-binding
GSVIVP00033458001 Myb_DNA-binding
GSVIVP00033681001 Myb_DNA-binding
GSVIVP00034095001 Myb_DNA-binding
GSVIVP00034097001 Myb_DNA-binding
GSVIVP00034098001 Myb_DNA-binding
GSVIVP00034125001 Myb_DNA-binding
GSVIVP00034800001 Myb_DNA-binding
GSVIVP00035708001 Myb_DNA-binding
GSVIVP00036110001 Myb_DNA-binding
GSVIVP00036657001 Myb_DNA-binding
GSVIVP00036753001 Myb_DNA-binding
GSVIVP00036919001 Myb_DNA-binding
GSVIVP00036944001 Myb_DNA-binding
GSVIVP00037016001 Myb_DNA-binding
GSVIVP00037318001 Myb_DNA-binding
GSVIVP00038075001 Myb_DNA-binding
GSVIVP00038174001 Myb_DNA-binding
GSVIVP00038661001 Myb_DNA-binding
GSVIVP00038662001 Myb_DNA-binding
GSVIVP00038760001 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608