Plant Transcription factor database - Universität Potsdam
version: 3.0

Zea mays MYB Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID Response_reg SNF2_N domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 247 gene models in this family



Gene modelDescriptionDomains
GRMZM2G000818_P01 Myb_DNA-binding
GRMZM2G001223_P03 Myb_DNA-binding
GRMZM2G001824_P01 Myb_DNA-binding
GRMZM2G001875_P01 Myb_DNA-binding
GRMZM2G002128_P01 Myb_DNA-binding
GRMZM2G002571_P01 Myb_DNA-binding
GRMZM2G002571_P02 Myb_DNA-binding
GRMZM2G002571_P03 Myb_DNA-binding
GRMZM2G002571_P04 Myb_DNA-binding
GRMZM2G002571_P05 Myb_DNA-binding
GRMZM2G002571_P06 Myb_DNA-binding
GRMZM2G003406_P01 Myb_DNA-binding
GRMZM2G004420_P01 Myb_DNA-binding
GRMZM2G005066_P01 Myb_DNA-binding
GRMZM2G005106_P02 Myb_DNA-binding
GRMZM2G006352_P01 Myb_DNA-binding
GRMZM2G006832_P01 Myb_DNA-binding
GRMZM2G007973_P01 Myb_DNA-binding
GRMZM2G007987_P01 Myb_DNA-binding
GRMZM2G010213_P01 Myb_DNA-binding
GRMZM2G010730_P01 Myb_DNA-binding
GRMZM2G011422_P01 Myb_DNA-binding
GRMZM2G013581_P01 Myb_DNA-binding
GRMZM2G015021_P01 Myb_DNA-binding
GRMZM2G017268_P01 Myb_DNA-binding
GRMZM2G017268_P02 Myb_DNA-binding
GRMZM2G017520_P01 Myb_DNA-binding
GRMZM2G020067_P01 Myb_DNA-binding
GRMZM2G020772_P01 Myb_DNA-binding
GRMZM2G020772_P02 Myb_DNA-binding
GRMZM2G021500_P01 Myb_DNA-binding
GRMZM2G021528_P01 Myb_DNA-binding
GRMZM2G021771_P01 Myb_DNA-binding
GRMZM2G022686_P01 Myb_DNA-binding P_C
GRMZM2G024468_P01 Myb_DNA-binding
GRMZM2G027697_P01 Myb_DNA-binding
GRMZM2G028054_P01 Myb_DNA-binding
GRMZM2G028054_P02 Myb_DNA-binding
GRMZM2G028054_P03 Myb_DNA-binding
GRMZM2G031323_P01 Myb_DNA-binding
GRMZM2G032655_P01 Myb_DNA-binding
GRMZM2G036512_P01 Myb_DNA-binding
GRMZM2G037636_P01 Myb_DNA-binding
GRMZM2G037636_P02 Myb_DNA-binding
GRMZM2G037650_P01 Myb_DNA-binding
GRMZM2G038722_P01 Myb_DNA-binding
GRMZM2G039557_P01 Myb_DNA-binding
GRMZM2G040347_P01 Myb_DNA-binding
GRMZM2G040411_P01 Myb_DNA-binding
GRMZM2G040411_P02 Myb_DNA-binding
GRMZM2G040411_P03 Myb_DNA-binding
GRMZM2G040411_P04 Myb_DNA-binding
GRMZM2G040924_P01 Myb_DNA-binding
GRMZM2G041415_P01 Myb_DNA-binding
GRMZM2G043792_P01 Myb_DNA-binding
GRMZM2G044718_P01 Myb_DNA-binding
GRMZM2G044824_P01 Myb_DNA-binding
GRMZM2G045439_P01 Myb_DNA-binding
GRMZM2G045748_P01 Myb_DNA-binding
GRMZM2G045748_P02 Myb_DNA-binding
GRMZM2G046443_P01 Myb_DNA-binding
GRMZM2G047031_P01 Myb_DNA-binding
GRMZM2G047600_P01 Myb_DNA-binding
GRMZM2G047626_P01 Myb_DNA-binding
GRMZM2G048136_P01 Myb_DNA-binding
GRMZM2G048136_P02 Myb_DNA-binding
GRMZM2G048910_P01 Myb_DNA-binding
GRMZM2G050305_P01 Myb_DNA-binding
GRMZM2G050550_P01 Myb_DNA-binding
GRMZM2G051256_P01 Myb_DNA-binding
GRMZM2G051793_P01 Myb_DNA-binding
GRMZM2G052377_P01 Myb_DNA-binding
GRMZM2G052606_P01 Myb_DNA-binding
GRMZM2G054111_P01 Myb_DNA-binding
GRMZM2G055158_P01 Myb_DNA-binding
GRMZM2G056407_P01 Myb_DNA-binding
GRMZM2G056986_P01 Myb_DNA-binding
GRMZM2G057027_P02 Myb_DNA-binding P_C
GRMZM2G057203_P02 Myb_DNA-binding
GRMZM2G060199_P01 Myb_DNA-binding
GRMZM2G061972_P01 Myb_DNA-binding
GRMZM2G063269_P01 Myb_DNA-binding
GRMZM2G064630_P01 Myb_DNA-binding
GRMZM2G064744_P01 Myb_DNA-binding
GRMZM2G069325_P02 Myb_DNA-binding
GRMZM2G070523_P01 Myb_DNA-binding
GRMZM2G070523_P02 Myb_DNA-binding
GRMZM2G070523_P03 Myb_DNA-binding
GRMZM2G070667_P01 Myb_DNA-binding
GRMZM2G070849_P01 Myb_DNA-binding
GRMZM2G076041_P01 Myb_DNA-binding
GRMZM2G077147_P01 Myb_DNA-binding
GRMZM2G077789_P01 Myb_DNA-binding
GRMZM2G078820_P01 Myb_DNA-binding
GRMZM2G079123_P01 Myb_DNA-binding
GRMZM2G081557_P01 Myb_DNA-binding
GRMZM2G081564_P01 Myb_DNA-binding
GRMZM2G081919_P01 Myb_DNA-binding
GRMZM2G081919_P02 Myb_DNA-binding
GRMZM2G081919_P03 Myb_DNA-binding
GRMZM2G081919_P04 Myb_DNA-binding
GRMZM2G081919_P05 Myb_DNA-binding
GRMZM2G081919_P06 Myb_DNA-binding
GRMZM2G083239_P01 Myb_DNA-binding
GRMZM2G084583_P01 Myb_DNA-binding
GRMZM2G084975_P01 Myb_DNA-binding
GRMZM2G084975_P02 Myb_DNA-binding
GRMZM2G085738_P01 Myb_DNA-binding
GRMZM2G086253_P01 Myb_DNA-binding
GRMZM2G087955_P01 Myb_DNA-binding
GRMZM2G088189_P01 Myb_DNA-binding
GRMZM2G088783_P01 Myb_DNA-binding
GRMZM2G089054_P01 Myb_DNA-binding
GRMZM2G089406_P01 Myb_DNA-binding
GRMZM2G089686_P01 Myb_DNA-binding
GRMZM2G090837_P01 Myb_DNA-binding
GRMZM2G091949_P01 Myb_DNA-binding
GRMZM2G093647_P01 Myb_DNA-binding
GRMZM2G093660_P01 Myb_DNA-binding
GRMZM2G093789_P01 Myb_DNA-binding
GRMZM2G093789_P02 Myb_DNA-binding
GRMZM2G094363_P01 Myb_DNA-binding
GRMZM2G094946_P01 Myb_DNA-binding
GRMZM2G095649_P01 Myb_DNA-binding
GRMZM2G095904_P01 Myb_DNA-binding
GRMZM2G096358_P01 Myb_DNA-binding
GRMZM2G097636_P01 Myb_DNA-binding
GRMZM2G097638_P01 Myb_DNA-binding
GRMZM2G098179_P01 Myb_DNA-binding
GRMZM2G101131_P01 Myb_DNA-binding
GRMZM2G101131_P02 Myb_DNA-binding
GRMZM2G102790_P01 Myb_DNA-binding
GRMZM2G103782_P01 Myb_DNA-binding
GRMZM2G103782_P02 Myb_DNA-binding
GRMZM2G104158_P01 Myb_DNA-binding
GRMZM2G104547_P01 Myb_DNA-binding
GRMZM2G104551_P01 Myb_DNA-binding
GRMZM2G104551_P02 Myb_DNA-binding
GRMZM2G104551_P03 Myb_DNA-binding
GRMZM2G104789_P01 Myb_DNA-binding
GRMZM2G104789_P02 Myb_DNA-binding
GRMZM2G105017_P01 Myb_DNA-binding
GRMZM2G105137_P01 Myb_DNA-binding
GRMZM2G106558_P02 Myb_DNA-binding
GRMZM2G108959_P01 Myb_DNA-binding
GRMZM2G110135_P01 Myb_DNA-binding
GRMZM2G111045_P01 Myb_DNA-binding
GRMZM2G111117_P01 Myb_DNA-binding
GRMZM2G111731_P01 Myb_DNA-binding
GRMZM2G115859_P01 Myb_DNA-binding
GRMZM2G117244_P01 Myb_DNA-binding
GRMZM2G118380_P01 Myb_DNA-binding
GRMZM2G118380_P02 Myb_DNA-binding
GRMZM2G118719_P01 Myb_DNA-binding
GRMZM2G119693_P01 Myb_DNA-binding
GRMZM2G121570_P01 Myb_DNA-binding
GRMZM2G122690_P01 Myb_DNA-binding
GRMZM2G123202_P01 Myb_DNA-binding
GRMZM2G124715_P02 Myb_DNA-binding
GRMZM2G124737_P01 Myb_DNA-binding
GRMZM2G125522_P01 Myb_DNA-binding
GRMZM2G126024_P01 Myb_DNA-binding
GRMZM2G126566_P01 Myb_DNA-binding
GRMZM2G126566_P02 Myb_DNA-binding
GRMZM2G126566_P03 Myb_DNA-binding
GRMZM2G126897_P01 Myb_DNA-binding
GRMZM2G127130_P01 Myb_DNA-binding
GRMZM2G127490_P01 Myb_DNA-binding
GRMZM2G127587_P01 Myb_DNA-binding
GRMZM2G127587_P04 Myb_DNA-binding
GRMZM2G127587_P05 Myb_DNA-binding
GRMZM2G127857_P01 Myb_DNA-binding
GRMZM2G130149_P01 Myb_DNA-binding
GRMZM2G130149_P02 Myb_DNA-binding
GRMZM2G130149_P04 Myb_DNA-binding
GRMZM2G131196_P01 Myb_DNA-binding
GRMZM2G131442_P02 Myb_DNA-binding
GRMZM2G131937_P01 Myb_DNA-binding
GRMZM2G134279_P01 Myb_DNA-binding
GRMZM2G137881_P01 Myb_DNA-binding
GRMZM2G139284_P01 Myb_DNA-binding
GRMZM2G139688_P01 Myb_DNA-binding
GRMZM2G141654_P01 Myb_DNA-binding
GRMZM2G142713_P01 Myb_DNA-binding
GRMZM2G143046_P01 Myb_DNA-binding
GRMZM2G143046_P02 Myb_DNA-binding
GRMZM2G143274_P01 Myb_DNA-binding
GRMZM2G143328_P01 Myb_DNA-binding
GRMZM2G144358_P01 Myb_DNA-binding
GRMZM2G145444_P01 Myb_DNA-binding
GRMZM2G147346_P01 Myb_DNA-binding
GRMZM2G147433_P01 Myb_DNA-binding
GRMZM2G147698_P01 Myb_DNA-binding
GRMZM2G148631_P01 Myb_DNA-binding
GRMZM2G148631_P02 Myb_DNA-binding
GRMZM2G148631_P03 Myb_DNA-binding
GRMZM2G148742_P02 Myb_DNA-binding
GRMZM2G149958_P01 Myb_DNA-binding
GRMZM2G150680_P01 Myb_DNA-binding
GRMZM2G150841_P01 Myb_DNA-binding
GRMZM2G151158_P01 Myb_DNA-binding
GRMZM2G151205_P01 Myb_DNA-binding
GRMZM2G151321_P01 Myb_DNA-binding
GRMZM2G152021_P01 Myb_DNA-binding
GRMZM2G155033_P01 Myb_DNA-binding
GRMZM2G155668_P01 Myb_DNA-binding
GRMZM2G157641_P01 Myb_DNA-binding
GRMZM2G158700_P01 Myb_DNA-binding
GRMZM2G159069_P01 Myb_DNA-binding
GRMZM2G159547_P01 Myb_DNA-binding
GRMZM2G159686_P01 Myb_DNA-binding
GRMZM2G160838_P01 Myb_DNA-binding
GRMZM2G160840_P01 Myb_DNA-binding
GRMZM2G161512_P01 Myb_DNA-binding
GRMZM2G161512_P02 Myb_DNA-binding
GRMZM2G161512_P03 Myb_DNA-binding
GRMZM2G161512_P04 Myb_DNA-binding
GRMZM2G162434_P01 Myb_DNA-binding
GRMZM2G162695_P01 Myb_DNA-binding
GRMZM2G162695_P02 Myb_DNA-binding
GRMZM2G162709_P01 Myb_DNA-binding
GRMZM2G164566_P01 Myb_DNA-binding
GRMZM2G166337_P01 Myb_DNA-binding
GRMZM2G166840_P01 Myb_DNA-binding
GRMZM2G166840_P02 Myb_DNA-binding
GRMZM2G167088_P01 Myb_DNA-binding
GRMZM2G167814_P03 Myb_DNA-binding
GRMZM2G167814_P05 Myb_DNA-binding
GRMZM2G167814_P06 Myb_DNA-binding
GRMZM2G167829_P01 Myb_DNA-binding
GRMZM2G169316_P01 Myb_DNA-binding
GRMZM2G169356_P01 Myb_DNA-binding
GRMZM2G170049_P01 Myb_DNA-binding
GRMZM2G170575_P01 Myb_DNA-binding
GRMZM2G171781_P01 Myb_DNA-binding
GRMZM2G172327_P01 Myb_DNA-binding
GRMZM2G172487_P01 Myb_DNA-binding
GRMZM2G172575_P01 Myb_DNA-binding
GRMZM2G173633_P01 Myb_DNA-binding
GRMZM2G175232_P01 Myb_DNA-binding
GRMZM2G176327_P01 Myb_DNA-binding
GRMZM2G176572_P01 Myb_DNA-binding
GRMZM2G176572_P02 Myb_DNA-binding
GRMZM2G176572_P03 Myb_DNA-binding
GRMZM2G176572_P04 Myb_DNA-binding
GRMZM2G178388_P01 Myb_DNA-binding
GRMZM2G179980_P01 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608