Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 65 gene models in this family



Gene modelDescriptionDomains
311286 fgenesh1_pm.C_scaffold_1000066 2-Hacid_dh_C Myb_DNA-binding
311756 fgenesh1_pm.C_scaffold_1000536 Myb_DNA-binding
317859 fgenesh1_pm.C_scaffold_3000875 Myb_DNA-binding
320480 fgenesh1_pm.C_scaffold_4000537 Myb_DNA-binding
322019 fgenesh1_pm.C_scaffold_4002076 Myb_DNA-binding
324943 fgenesh1_pm.C_scaffold_6000163 Myb_DNA-binding
327672 fgenesh1_pm.C_scaffold_6002892 Myb_DNA-binding
332814 fgenesh1_pm.C_scaffold_8002157 Linker_histone Myb_DNA-binding
341194 fgenesh1_pg.C_scaffold_3000957 Myb_DNA-binding
352012 fgenesh1_pg.C_scaffold_6002605 Myb_DNA-binding
357563 fgenesh1_pg.C_scaffold_8001350 Myb_DNA-binding
470177 fgenesh2_kg.1__131__AT1G01060.3 Myb_DNA-binding
471072 fgenesh2_kg.1__1026__AT1G09710.1 Myb_DNA-binding
471767 fgenesh2_kg.1__1721__AT1G15720.1 Myb_DNA-binding
471953 fgenesh2_kg.1__1907__AT1G17460.1 Myb_DNA-binding
472050 fgenesh2_kg.1__2004__AT1G18330.2 Myb_DNA-binding
472119 fgenesh2_kg.1__2073__AT1G18960.1 Myb_DNA-binding
472123 fgenesh2_kg.1__2077__AT1G19000.2 Myb_DNA-binding
472410 fgenesh2_kg.1__2364__AT1G21700.1 Myb_DNA-binding SWIRM
474123 fgenesh2_kg.1__4077__AT1G49950.2 Linker_histone Myb_DNA-binding
476127 fgenesh2_kg.2__1257__AT1G70000.1 Myb_DNA-binding
476235 fgenesh2_kg.2__1365__AT1G71030.1 Myb_DNA-binding
476400 fgenesh2_kg.2__1530__AT1G72650.2 Myb_DNA-binding
476620 fgenesh2_kg.2__1750__AT1G74840.1 Myb_DNA-binding
478110 fgenesh2_kg.3__811__AT3G07740.1 Myb_DNA-binding SWIRM ZZ
478281 fgenesh2_kg.3__982__AT3G09600.1 Myb_DNA-binding
478482 fgenesh2_kg.3__1183__AT3G11450.1 DnaJ Myb_DNA-binding
479087 fgenesh2_kg.3__1788__AT3G16350.1 Myb_DNA-binding
479664 fgenesh2_kg.3__2365__AT3G21430.2 DIRP Myb_DNA-binding
480741 fgenesh2_kg.3__3442__AT2G18328.1 Myb_DNA-binding
481955 fgenesh2_kg.4__1015__AT2G30432.1 Myb_DNA-binding
482686 fgenesh2_kg.4__1746__AT2G37025.1 Myb_DNA-binding
483567 fgenesh2_kg.4__2627__AT2G44430.1 Bromodomain Myb_DNA-binding
485345 fgenesh2_kg.5__1337__AT3G49850.1 Myb_DNA-binding
488595 fgenesh2_kg.6__1729__AT5G17300.1 Myb_DNA-binding
490687 fgenesh2_kg.7__120__AT4G39160.1 Myb_DNA-binding
491219 fgenesh2_kg.7__652__AT4G34430.4 Myb_DNA-binding SWIRM ZZ
493242 fgenesh2_kg.7__2675__AT4G16420.1 Myb_DNA-binding SWIRM ZZ
493689 fgenesh2_kg.7__3122__AT5G37260.1 Myb_DNA-binding
495585 fgenesh2_kg.8__1401__AT5G55020.1 Myb_DNA-binding
496330 fgenesh2_kg.8__2146__AT5G61620.1 Myb_DNA-binding
856156 Al_scaffold_0612_1 Myb_DNA-binding
856498 Al_scaffold_0136_3 Myb_DNA-binding
864377 Al_scaffold_0006_3886 Myb_DNA-binding
867626 Al_scaffold_0005_3105 Myb_DNA-binding
872430 Al_scaffold_0003_1071 Myb_DNA-binding
876610 Al_scaffold_0002_1204 Myb_DNA-binding
878325 Al_scaffold_0001_92 Myb_DNA-binding
885383 Al_scaffold_0008_1647 Myb_DNA-binding
886038 Al_scaffold_0008_2302 Myb_DNA-binding
889159 scaffold_101953.1 Linker_histone Myb_DNA-binding
891746 scaffold_104540.1 Myb_DNA-binding
902029 scaffold_401530.1 Myb_DNA-binding
902030 scaffold_401531.1 Myb_DNA-binding
902435 scaffold_401936.1 Myb_DNA-binding SWIRM
902822 scaffold_402323.1 Myb_DNA-binding
904154 scaffold_403655.1 Myb_DNA-binding
904197 scaffold_403698.1 Myb_DNA-binding
904238 scaffold_403739.1 Myb_DNA-binding SWIRM
908528 scaffold_600585.1 DnaJ Myb_DNA-binding
910824 scaffold_602881.1 DIRP Myb_DNA-binding
912384 scaffold_700126.1 Myb_DNA-binding
912710 scaffold_700452.1 Myb_DNA-binding
916656 scaffold_800056.1 Myb_DNA-binding
918840 scaffold_802240.1 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608