Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis thaliana MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 100 gene models in this family



Gene modelDescriptionDomains
AT1G01060.1 LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor Myb_DNA-binding
AT1G01060.2 LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor Myb_DNA-binding
AT1G01060.3 LHY (LATE ELONGATED HYPOCOTYL); DNA binding Myb_DNA-binding
AT1G01060.4 LHY (LATE ELONGATED HYPOCOTYL) Myb_DNA-binding
AT1G01380.1 ETC1 (ENHANCER OF TRY AND CPC 1); DNA binding / transcription factor Myb_DNA-binding
AT1G01520.1 myb family transcription factor Myb_DNA-binding
AT1G06910.1 TRFL7 (TRF-LIKE 7); DNA binding / transcription factor Myb_DNA-binding
AT1G07540.1 TRFL2 (TRF-LIKE 2); DNA binding Myb_DNA-binding
AT1G09710.1 DNA binding Myb_DNA-binding
AT1G15720.1 TRFL5 (TRF-LIKE 5); DNA binding / transcription factor Myb_DNA-binding
AT1G17460.1 TRFL3 (TRF-LIKE 3); DNA binding / transcription factor Myb_DNA-binding
AT1G17520.1 DNA-binding protein, putative Linker_histone Myb_DNA-binding
AT1G18330.1 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1); DNA binding / transcription factor Myb_DNA-binding
AT1G18330.2 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) Myb_DNA-binding
AT1G18960.1 myb family transcription factor Myb_DNA-binding
AT1G19000.1 myb family transcription factor Myb_DNA-binding
AT1G19000.2 myb family transcription factor Myb_DNA-binding
AT1G19510.1 myb family transcription factor Myb_DNA-binding
AT1G21700.1 ATSWI3C (Arabidopsis thaliana switching protein 3C); DNA binding Myb_DNA-binding SWIRM
AT1G49950.1 ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding / transcription factor Linker_histone Myb_DNA-binding
AT1G49950.2 ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding / transcription factor Linker_histone Myb_DNA-binding
AT1G49950.3 ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding Linker_histone Myb_DNA-binding
AT1G58220.1 myb family transcription factor Myb_DNA-binding
AT1G70000.1 DNA-binding family protein Myb_DNA-binding
AT1G71030.1 ATMYBL2 (Arabidopsis myb-like 2); DNA binding / transcription factor Myb_DNA-binding
AT1G72650.1 TRFL6 (TRF-LIKE 6); DNA binding / transcription factor Myb_DNA-binding
AT1G72650.2 TRFL6 (TRF-LIKE 6); DNA binding / transcription factor Myb_DNA-binding
AT1G72740.1 DNA-binding family protein / histone H1/H5 family protein Linker_histone Myb_DNA-binding
AT1G72740.2 DNA-binding family protein / histone H1/H5 family protein Linker_histone Myb_DNA-binding
AT1G74840.1 myb family transcription factor Myb_DNA-binding
AT1G75250.1 myb family transcription factor Myb_DNA-binding
AT1G75250.2 myb family transcription factor Myb_DNA-binding
AT2G03470.1 myb family transcription factor / ELM2 domain-containing protein ELM2 Myb_DNA-binding
AT2G03470.2 myb family transcription factor / ELM2 domain-containing protein ELM2 Myb_DNA-binding
AT2G13960.1 myb family transcription factor Myb_DNA-binding
AT2G13960.2 myb family transcription factor Myb_DNA-binding
AT2G18328.1 DNA binding Myb_DNA-binding
AT2G30420.1 myb family transcription factor Myb_DNA-binding
AT2G30424.1 DNA binding Myb_DNA-binding
AT2G30432.1 TCL1 (TRICHOMELESS1); DNA binding Myb_DNA-binding
AT2G33610.1 ATSWI3B (Arabidopsis thaliana switching protein 3B); DNA binding Myb_DNA-binding SWIRM
AT2G36960.1 TKI1 (TSL-KINASE INTERACTING PROTEIN 1); DNA binding / transcription factor Myb_DNA-binding
AT2G36960.2 TKI1 (TSL-KINASE INTERACTING PROTEIN 1); DNA binding / transcription factor Myb_DNA-binding
AT2G42150.1 DNA-binding bromodomain-containing protein Bromodomain Myb_DNA-binding
AT2G44430.1 DNA-binding bromodomain-containing protein Bromodomain Myb_DNA-binding
AT2G46410.1 CPC (CAPRICE); DNA binding / transcription factor Myb_DNA-binding
AT2G46830.1 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); transcription factor Myb_DNA-binding
AT2G47210.1 myb family transcription factor Myb_DNA-binding
AT2G47620.1 ATSWI3A (Arabidopsis thaliana switching protein 3A); DNA binding Myb_DNA-binding SWIRM
AT3G05380.1 DNA binding / transcription factor DIRP Myb_DNA-binding
AT3G05380.2 DNA binding / transcription factor DIRP Myb_DNA-binding
AT3G07740.1 ADA2A (Arabidopsis adaptor 2A homolog); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT3G07740.2 ADA2A (Arabidopsis adaptor 2A homolog); DNA binding / transcription factor Myb_DNA-binding SWIRM
AT3G07740.3 ADA2A (Arabidopsis adaptor 2A homolog) Myb_DNA-binding SWIRM ZZ
AT3G09600.1 myb family transcription factor Myb_DNA-binding
AT3G09600.2 myb family transcription factor Myb_DNA-binding
AT3G10113.1 myb family transcription factor Myb_DNA-binding
AT3G10580.1 myb family transcription factor Myb_DNA-binding
AT3G10580.2 myb family transcription factor Myb_DNA-binding
AT3G16350.1 myb family transcription factor Myb_DNA-binding
AT3G21430.2 DNA binding DIRP Myb_DNA-binding
AT3G23250.2 AtMYB15/AtY19/MYB15 (myb domain protein 15); DNA binding Myb_DNA-binding
AT3G46130.2 MYB111 (myb domain protein 111); DNA binding Myb_DNA-binding
AT3G46130.3 MYB111 (myb domain protein 111) Myb_DNA-binding
AT3G49850.1 ATTRB3/TRB3 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding / transcription factor Myb_DNA-binding
AT3G53790.1 TRFL4 (TRF-LIKE 4); DNA binding Myb_DNA-binding
AT4G01060.1 ETC3 (ENHANCER OF TRY AND CPC 3); DNA binding / transcription factor Myb_DNA-binding
AT4G01060.2 ETC3 (ENHANCER OF TRY AND CPC 3); DNA binding / transcription factor Myb_DNA-binding
AT4G01060.3 ETC3 (ENHANCER OF TRY AND CPC 3); DNA binding / transcription factor Myb_DNA-binding
AT4G01280.1 myb family transcription factor Myb_DNA-binding
AT4G01280.2 myb family transcription factor Myb_DNA-binding
AT4G09450.1 myb family transcription factor Myb_DNA-binding
AT4G16420.1 ADA2B (PROPORZ1); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G16420.2 ADA2B (PROPORZ1); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G16420.3 ADA2B (PROPORZ1); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G34430.1 CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G34430.2 CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G34430.3 CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G34430.4 CHB3 (Arabidopsis thaliana switch 3D); DNA binding / transcription factor Myb_DNA-binding SWIRM ZZ
AT4G39160.1 DNA binding / transcription factor Myb_DNA-binding
AT4G39250.1 DNA binding / transcription factor Myb_DNA-binding
AT5G02840.1 LCL1 (LHY/CCA1-LIKE 1); DNA binding / transcription factor Myb_DNA-binding
AT5G02840.2 LCL1 (LHY/CCA1-LIKE 1); DNA binding / transcription factor Myb_DNA-binding
AT5G02840.3 LCL1 (LHY/CCA1-LIKE 1); DNA binding / transcription factor Myb_DNA-binding
AT5G04110.1 DNA topoisomerase II family protein DNA_gyraseB Myb_DNA-binding
AT5G17300.1 myb family transcription factor Myb_DNA-binding
AT5G27610.1 DNA binding / transcription factor DIRP Myb_DNA-binding
AT5G37260.1 CIR1/RVE2 (CIRCADIAN 1); DNA binding / transcription factor Myb_DNA-binding
AT5G41020.1 myb family transcription factor Myb_DNA-binding
AT5G47390.1 myb family transcription factor Myb_DNA-binding
AT5G52660.1 myb family transcription factor Myb_DNA-binding
AT5G52660.2 myb family transcription factor Myb_DNA-binding
AT5G53200.1 TRY (TRIPTYCHON); DNA binding / transcription factor Myb_DNA-binding
AT5G56840.1 DNA-binding family protein Myb_DNA-binding
AT5G58340.1 DNA binding Myb_DNA-binding
AT5G59780.1 MYB59 (myb domain protein 59); DNA binding / transcription factor Myb_DNA-binding
AT5G59780.2 MYB59 (myb domain protein 59); DNA binding / transcription factor Myb_DNA-binding
AT5G61620.1 myb family transcription factor Myb_DNA-binding
AT5G67580.1 ATTRB2/TRB2 (TELOMERE REPEAT BINDING FACTOR 2); DNA binding / transcription factor Linker_histone Myb_DNA-binding
AT5G67580.2 ATTRB2/TRB2 (TELOMERE REPEAT BINDING FACTOR 2); DNA binding / transcription factor Linker_histone Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608

Specific references

Yanhui, C; Xiaoyuan, Y; Kun, H; Meihua, L; Jigang, L; Zhaofeng, G; Zhiqiang, L; Yunfei, Z; Xiaoxiao, W; Xiaoming, Q; Yunping, S; Li, Z; Xiaohui, D; Jingchu, L; Xing-Wang, D; Zhangliang, C; Hongya, G; Li-Jia, Q. 2006. The MYB Transcription Factor Superfamily of Arabidopsis: Expression Analysis and Phylogenetic Comparison with the Rice MYB Family. Plant Mol Biol 60(1):107-124 PUBMEDID:16463103