Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 85 gene models in this family



Gene modelDescriptionDomains
OsIBCD000196 Chr01_311,1344,,,1,1344, Myb_DNA-binding
OsIBCD000395 Chr01_605,828,,,1,828, Myb_DNA-binding
OsIBCD000460 Chr01_712,621,,,1,621, Myb_DNA-binding
OsIBCD000580 Chr01_870,1101,,,1,1101, Myb_DNA-binding
OsIBCD000605 Chr01_903,921,,,1,921, Myb_DNA-binding
OsIBCD000613 Chr01_914,2622,,,1,2622, DIRP Myb_DNA-binding
OsIBCD002073 Chr01_3284,921,,,1,921, Myb_DNA-binding
OsIBCD002490 Chr01_3961,975,,,1,975, Linker_histone Myb_DNA-binding
OsIBCD002584 Chr01_4105,804,,,1,804, Myb_DNA-binding
OsIBCD002589 Chr01_4110,912,,,1,912, Myb_DNA-binding
OsIBCD003070 Chr01_4801,1062,,,1,1062, Linker_histone Myb_DNA-binding
OsIBCD005335 Chr02_907,840,,,1,840, Myb_DNA-binding
OsIBCD005385 Chr02_975,1497,,,1,1497, Myb_DNA-binding SWIRM
OsIBCD006593 Chr02_3047,813,,,1,813, Myb_DNA-binding
OsIBCD006825 Chr02_3436,1986,,,1,1986, Myb_DNA-binding
OsIBCD007566 Chr02_4535,819,,,1,819, Myb_DNA-binding
OsIBCD007585 Chr02_4578,1470,,,1,1470, Myb_DNA-binding
OsIBCD007704 Chr02_4756,300,,,1,300, Myb_DNA-binding
OsIBCD008146 Chr02_5370,1866,,,1,1866, Myb_DNA-binding
OsIBCD008409 Chr02_5726,1902,,,1,1902, Myb_DNA-binding
OsIBCD009407 Chr03_1200,2277,,,1,2277, DUF1668 Myb_DNA-binding
OsIBCD009431 Chr03_1244,2160,,,1,2160, Myb_DNA-binding
OsIBCD010134 Chr03_2233,2793,,,1,2793, Myb_DNA-binding
OsIBCD010288 Chr03_2460,1236,,,1,1236, Myb_DNA-binding peroxidase
OsIBCD010530 Chr03_2869,249,,,1,249, Myb_DNA-binding
OsIBCD010631 Chr03_3035,1803,,,1,1803, Myb_DNA-binding
OsIBCD010922 Chr03_3683,1227,,,1,1227, Myb_DNA-binding
OsIBCD011232 Chr03_4245,639,,,1,639, Myb_DNA-binding
OsIBCD011330 Chr03_4374,2595,,,1,2595, DIRP Myb_DNA-binding
OsIBCD011827 Chr03_5164,2907,,,1,2907, Myb_DNA-binding SWIRM ZZ
OsIBCD011991 Chr03_5396,1713,,,1,1713, Myb_DNA-binding ZZ
OsIBCD012106 Chr03_5551,2241,,,1,2241, Myb_DNA-binding Ribosomal_S14
OsIBCD012545 Chr03_6141,639,,,1,639, Myb_DNA-binding
OsIBCD012561 Chr03_6167,2610,,,1,2610, Myb_DNA-binding
OsIBCD012698 Chr03_6329,264,,,1,264, Myb_DNA-binding
OsIBCD012851 Chr04_110,2535,,,1,2535, Myb_DNA-binding SWIRM ZZ
OsIBCD013856 Chr04_2025,807,,,1,807, Myb_DNA-binding
OsIBCD014722 Chr04_3347,1647,,,1,1647, Myb_DNA-binding SWIRM
OsIBCD014836 Chr04_3506,741,,,1,741, Myb_DNA-binding
OsIBCD015374 Chr04_4293,1392,,,1,1392, Myb_DNA-binding
OsIBCD016547 Chr05_580,732,,,1,732, Myb_DNA-binding
OsIBCD016727 Chr05_910,864,,,1,864, Myb_DNA-binding
OsIBCD018170 Chr05_3448,399,,,1,399, Myb_DNA-binding
OsIBCD018750 Chr05_4318,1806,,,1,1806, Myb_DNA-binding
OsIBCD018769 Chr05_4343,843,,,1,843, Myb_DNA-binding
OsIBCD018990 Chr05_4661,273,,,1,273, Myb_DNA-binding
OsIBCD018991 Chr05_4662,336,,,1,336, Myb_DNA-binding
OsIBCD019055 Chr05_4747,789,,,1,789, Myb_DNA-binding
OsIBCD019136 Chr06_53,6213,,,1,6213, DUF6 Myb_DNA-binding
OsIBCD019576 Chr06_727,1287,,,1,1287, Myb_DNA-binding
OsIBCD019579 Chr06_730,966,,,1,966, Myb_DNA-binding
OsIBCD019580 Chr06_731,1185,,,1,1185, Myb_DNA-binding
OsIBCD019581 Chr06_732,996,,,1,996, Myb_DNA-binding
OsIBCD019585 Chr06_737,1011,,,1,1011, Myb_DNA-binding
OsIBCD019623 Chr06_778,2238,,,1,2238, DAO Myb_DNA-binding
OsIBCD019759 Chr06_997,744,,,1,744, Myb_DNA-binding
OsIBCD020284 Chr06_1836,2367,,,1,2367, Myb_DNA-binding
OsIBCD021733 Chr06_4354,1011,,,1,1011, Myb_DNA-binding
OsIBCD022072 Chr06_4839,1347,,,1,1347, Myb_DNA-binding
OsIBCD023203 Chr07_1994,465,,,1,465, Myb_DNA-binding
OsIBCD024967 Chr08_391,1152,,,1,1152, Myb_DNA-binding
OsIBCD024990 Chr08_437,978,,,1,978, Myb_DNA-binding
OsIBCD025000 Chr08_449,675,,,1,675, Myb_DNA-binding
OsIBCD025043 Chr08_519,2226,,,1,2226, Myb_DNA-binding
OsIBCD027050 Chr08_4018,1983,,,1,1983, Bromodomain Myb_DNA-binding
OsIBCD027648 Chr09_356,429,,,1,429, Myb_DNA-binding
OsIBCD028963 Chr09_2646,1902,,,1,1902, Myb_DNA-binding
OsIBCD031473 Chr10_3285,798,,,1,798, Myb_DNA-binding
OsIBCD031474 Chr10_3286,507,,,1,507, Myb_DNA-binding
OsIBCD032048 Chr11_700,2628,,,1,2628, Myb_DNA-binding SWIRM
OsIBCD033615 Chr11_3340,318,,,1,318, Myb_DNA-binding
OsIBCD034203 Chr12_689,681,,,1,681, Myb_DNA-binding
OsIBCD034209 Chr12_698,2289,,,1,2289, Myb_DNA-binding SWIRM
OsIBCD035653 Chr12_3150,2940,,,1,2940, Linker_histone Myb_DNA-binding NPH3
OsIBCD036041 Chr01_1048,588,,,1,588, Myb_DNA-binding
OsIBCD036689 Chr01_4446,276,,,1,276, Myb_DNA-binding
OsIBCD038766 Chr03_1887,480,,,1,480, Myb_DNA-binding
OsIBCD041251 Chr05_3451,273,,,1,273, Myb_DNA-binding
OsIBCD041570 Chr06_110,270,,,1,270, Myb_DNA-binding
OsIBCD041867 Chr06_1390,510,,,1,510, Myb_DNA-binding
OsIBCD041882 Chr06_1457,462,,,1,462, Myb_DNA-binding
OsIBCD041883 Chr06_1458,429,,,1,429, Myb_DNA-binding
OsIBCD042079 Chr06_2587,237,,,1,237, Myb_DNA-binding
OsIBCD042950 Chr07_2051,228,,,1,228, Myb_DNA-binding
OsIBSD048264 Supscaffold1124_1,1266,,,1,1266, Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608