Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 115 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g06320.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g07430.1 myb-like DNA-binding domain containing protein, putative Myb_DNA-binding
LOC_Os01g09280.1 myb-related transcription activator, putative, expressed Myb_DNA-binding
LOC_Os01g09640.1 Myb transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g09760.1 DIRP family protein, putative, expressed DIRP Myb_DNA-binding
LOC_Os01g11200.1 transforming protein myb, putative Myb_DNA-binding
LOC_Os01g12700.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os01g34060.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g40670.1 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os01g40670.2 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os01g41900.1 Myb transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g41900.2 Myb transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g43180.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os01g43230.3 expressed protein Myb_DNA-binding
LOC_Os01g44370.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os01g44390.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g44390.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g47370.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os01g51154.1 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os01g51154.2 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os01g51154.3 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os01g74410.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g10060.1 SWIRM domain containing protein, expressed Myb_DNA-binding SWIRM
LOC_Os02g17190.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g30700.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os02g34630.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g34630.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g42850.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g45670.1 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os02g46030.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g47744.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g47744.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g47744.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g47744.4 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g57270.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os02g57270.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g13790.1 myb/SANT domain protein, putative, expressed Myb_DNA-binding
LOC_Os03g13790.2 myb/SANT domain protein, putative, expressed Myb_DNA-binding
LOC_Os03g19630.1 myb-like DNA-binding domain containing protein Myb_DNA-binding
LOC_Os03g25304.1 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os03g31230.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g31230.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g43800.1 DIRP family protein, putative, expressed DIRP Myb_DNA-binding
LOC_Os03g43800.2 DIRP family protein, putative, expressed DIRP Myb_DNA-binding
LOC_Os03g51220.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed Myb_DNA-binding SWIRM ZZ
LOC_Os03g53960.1 transcriptional adaptor, putative, expressed Myb_DNA-binding ZZ
LOC_Os03g53960.2 transcriptional adaptor, putative, expressed Myb_DNA-binding ZZ
LOC_Os03g56234.1 myb/SANT domain protein, putative, expressed Myb_DNA-binding
LOC_Os03g56234.2 myb/SANT domain protein, putative, expressed Myb_DNA-binding
LOC_Os03g62100.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os03g62379.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os03g63890.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os04g01970.1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed Myb_DNA-binding SWIRM
LOC_Os04g27410.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os04g30890.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g40420.1 SWIRM domain containing protein, expressed Myb_DNA-binding SWIRM
LOC_Os04g49450.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os04g58020.1 MYB_Al protein, putative, expressed Myb_DNA-binding
LOC_Os05g02420.2 expressed protein Myb_DNA-binding
LOC_Os05g07010.1 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os05g07010.2 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os05g10690.1 Myb transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g37050.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g46330.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g50340.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g50350.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g51160.1 Myb transcription factor, putative, expressed Myb_DNA-binding
LOC_Os05g51160.2 Myb transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g01670.1 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os06g07640.1 myb-like DNA-binding domain, SHAQKYF class family protein Myb_DNA-binding
LOC_Os06g07650.1 myb-like DNA-binding domain, SHAQKYF class family protein Myb_DNA-binding
LOC_Os06g08290.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g14010.1 myb-like DNA-binding domain containing protein Myb_DNA-binding
LOC_Os06g14700.1 myb-like DNA-binding domain containing protein Myb_DNA-binding
LOC_Os06g14710.1 myb-like DNA-binding domain containing protein, expressed Myb_DNA-binding
LOC_Os06g19980.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g45840.1 MYB transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g45840.2 MYB transcription factor, putative, expressed Myb_DNA-binding
LOC_Os06g51260.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g25370.1 myb-like DNA-binding domain containing protein Myb_DNA-binding
LOC_Os07g26150.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g30130.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g30130.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g30130.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g30130.4 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os07g44090.1 myb-related protein Hv33, putative, expressed Myb_DNA-binding
LOC_Os07g44090.2 myb-related protein Hv33, putative, expressed Myb_DNA-binding
LOC_Os07g49530.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g04840.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g05510.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g05510.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g06110.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g06110.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g06110.4 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g06110.5 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g06240.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os08g39980.1 DNA-binding bromodomain-containing protein, putative, expressed Bromodomain Myb_DNA-binding
LOC_Os09g31454.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os10g20990.1 ribosomal protein S12 containing protein Myb_DNA-binding Ribosomal_S12
LOC_Os10g30690.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os10g41200.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os10g41200.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os10g41260.1 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os11g08080.1 SWIRM domain containing protein, expressed Myb_DNA-binding SWIRM
LOC_Os11g08080.2 SWIRM domain containing protein, expressed Myb_DNA-binding SWIRM
LOC_Os11g47460.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os11g47460.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os11g47460.4 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g07730.1 SWIRM domain containing protein, expressed Myb_DNA-binding SWIRM
LOC_Os12g33950.1 MYB family transcription factor, putative Myb_DNA-binding
LOC_Os12g37970.2 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g37970.3 MYB family transcription factor, putative, expressed Myb_DNA-binding
LOC_Os12g41920.1 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os12g41920.2 single myb histone, putative, expressed Linker_histone Myb_DNA-binding
LOC_Os12g41920.3 single myb histone, putative, expressed Linker_histone Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608

Specific references

Yanhui, C; Xiaoyuan, Y; Kun, H; Meihua, L; Jigang, L; Zhaofeng, G; Zhiqiang, L; Yunfei, Z; Xiaoxiao, W; Xiaoming, Q; Yunping, S; Li, Z; Xiaohui, D; Jingchu, L; Xing-Wang, D; Zhangliang, C; Hongya, G; Li-Jia, Q. 2006. The MYB Transcription Factor Superfamily of Arabidopsis: Expression Analysis and Phylogenetic Comparison with the Rice MYB Family. Plant Mol Biol 60(1):107-124 PUBMEDID:16463103