Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 101 gene models in this family



Gene modelDescriptionDomains
175541 gw1.I.4141.1 Linker_histone Myb_DNA-binding
195378 gw1.IV.467.1 Myb_DNA-binding SWIRM ZZ
198884 gw1.IV.3973.1 Myb_DNA-binding
198916 gw1.IV.4005.1 Myb_DNA-binding
201310 gw1.IX.1775.1 Myb_DNA-binding
203733 gw1.IX.4198.1 Myb_DNA-binding
205966 gw1.V.1367.1 Myb_DNA-binding
218433 gw1.VII.2738.1 Myb_DNA-binding
219224 gw1.VII.3529.1 Myb_DNA-binding
219273 gw1.VII.3578.1 Myb_DNA-binding
226346 gw1.X.1043.1 Myb_DNA-binding
240691 gw1.XIII.940.1 DIRP Myb_DNA-binding
247017 gw1.XIV.3760.1 Myb_DNA-binding SWIRM ZZ
251567 gw1.XV.1003.1 Myb_DNA-binding
252663 gw1.XV.2099.1 Myb_DNA-binding
256693 gw1.XVI.2632.1 Myb_DNA-binding
256979 gw1.XVI.2918.1 Myb_DNA-binding
268412 gw1.132.42.1 Myb_DNA-binding
268560 gw1.133.2.1 DIRP Myb_DNA-binding
270531 gw1.142.54.1 Myb_DNA-binding
281820 gw1.28.394.1 Myb_DNA-binding
289426 gw1.44.639.1 Myb_DNA-binding
292805 gw1.64.457.1 Myb_DNA-binding
409598 gw1.II.933.1 Myb_DNA-binding
409823 gw1.II.1158.1 Myb_DNA-binding
410826 gw1.II.2161.1 Myb_DNA-binding SWIRM
418789 gw1.VIII.217.1 Myb_DNA-binding
420561 gw1.VIII.1989.1 Myb_DNA-binding
420905 gw1.VIII.2333.1 Myb_DNA-binding
421460 gw1.VIII.2888.1 Myb_DNA-binding
421763 gw1.XII.223.1 Myb_DNA-binding
424362 gw1.57.329.1 Myb_DNA-binding
547687 eugene3.00010128 Myb_DNA-binding
548224 eugene3.00010665 Myb_DNA-binding zf-CCHC
551008 eugene3.00020323 Myb_DNA-binding
552326 eugene3.00021641 Myb_DNA-binding
552367 eugene3.00021682 Myb_DNA-binding
553339 eugene3.00002654 Myb_DNA-binding
553628 eugene3.00030261 Myb_DNA-binding
554751 eugene3.00031384 Myb_DNA-binding
556396 eugene3.00041109 Myb_DNA-binding
557252 eugene3.00090512 Myb_DNA-binding
557527 eugene3.00090787 Linker_histone Myb_DNA-binding
559267 eugene3.00050882 Myb_DNA-binding SWIRM
560542 eugene3.00060501 Myb_DNA-binding
561043 eugene3.00061002 Linker_histone Myb_DNA-binding
561590 eugene3.00061549 Myb_DNA-binding
562293 eugene3.00070231 Myb_DNA-binding
563966 eugene3.00080561 Myb_DNA-binding
564285 eugene3.00080880 Myb_DNA-binding
565739 eugene3.00100297 Myb_DNA-binding
568212 eugene3.00110226 Myb_DNA-binding
569412 eugene3.00120065 Myb_DNA-binding
570027 eugene3.00120680 Myb_DNA-binding
572279 eugene3.00140324 ELM2 Myb_DNA-binding
572303 eugene3.00140348 Myb_DNA-binding
575397 eugene3.00150792 Myb_DNA-binding SWIRM
582938 eugene3.01450016 Linker_histone Myb_DNA-binding
588650 eugene3.02560007 Myb_DNA-binding
589465 eugene3.00280201 Myb_DNA-binding
594467 eugene3.00640055 Myb_DNA-binding
641182 grail3.0068013201 Myb_DNA-binding
644482 grail3.0039007801 ELM2 Myb_DNA-binding
645998 grail3.0037016601 Myb_DNA-binding
652432 grail3.0024011101 Myb_DNA-binding ZZ
653302 grail3.0112005801 Myb_DNA-binding
666386 grail3.0005003601 Myb_DNA-binding
667101 grail3.0194002501 Myb_DNA-binding ZZ
671644 grail3.0133000101 Myb_DNA-binding
674550 grail3.0197000301 Myb_DNA-binding
676030 grail3.0028018001 Myb_DNA-binding
676503 grail3.0029014701 Myb_DNA-binding
705811 estExt_Genewise1_v1.C_LG_I0389 Myb_DNA-binding
731468 estExt_Genewise1_v1.C_LG_XIV1950 Myb_DNA-binding
735744 estExt_Genewise1_v1.C_LG_XVI3514 Myb_DNA-binding
753863 fgenesh4_pg.C_LG_II000043 Myb_DNA-binding
758364 fgenesh4_pg.C_LG_III001906 Myb_DNA-binding
763268 fgenesh4_pg.C_LG_VI001578 Myb_DNA-binding
764423 fgenesh4_pg.C_LG_VII000768 Myb_DNA-binding
764934 fgenesh4_pg.C_LG_VII001279 Linker_histone Myb_DNA-binding
767450 fgenesh4_pg.C_LG_IX000501 Myb_DNA-binding SWIRM ZZ
768851 fgenesh4_pg.C_LG_X000341 Myb_DNA-binding
773495 fgenesh4_pg.C_LG_XII001270 Myb_DNA-binding
777170 fgenesh4_pg.C_LG_XVI000412 Myb_DNA-binding
778589 fgenesh4_pg.C_LG_XVII000468 Myb_DNA-binding
784079 fgenesh4_pg.C_scaffold_122000043 Myb_DNA-binding
792669 fgenesh4_pg.C_scaffold_4421000001 Myb_DNA-binding
799720 fgenesh4_pm.C_LG_III000185 Myb_DNA-binding
800771 fgenesh4_pm.C_LG_IV000458 Myb_DNA-binding
804600 fgenesh4_pm.C_LG_IX000647 Bromodomain Myb_DNA-binding
805314 fgenesh4_pm.C_LG_X000620 ELM2 Myb_DNA-binding
806056 fgenesh4_pm.C_LG_XI000331 Myb_DNA-binding
807195 fgenesh4_pm.C_LG_XIV000005 Linker_histone Myb_DNA-binding
807368 fgenesh4_pm.C_LG_XIV000178 Myb_DNA-binding
807470 fgenesh4_pm.C_LG_XIV000280 Myb_DNA-binding
815137 estExt_fgenesh4_pg.C_LG_I1047 Myb_DNA-binding
816395 estExt_fgenesh4_pg.C_LG_II0973 Myb_DNA-binding
820938 estExt_fgenesh4_pg.C_LG_VIII1856 HAND Myb_DNA-binding SLIDE
821909 estExt_fgenesh4_pg.C_LG_X0649 Myb_DNA-binding
822022 estExt_fgenesh4_pg.C_LG_X0883 Myb_DNA-binding
836304 estExt_fgenesh4_pm.C_290035 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608