Plant Transcription factor database - Universität Potsdam
version: 3.0

Selaginella moellendorffii MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 45 gene models in this family



Gene modelDescriptionDomains
101484 e_gw1.24.446.1 Myb_DNA-binding
110042 e_gw1.39.58.1 Myb_DNA-binding
130556 e_gw1.101.49.1 Myb_DNA-binding
133546 e_gw1.119.48.1 Myb_DNA-binding
152798 estExt_Genewise1.C_380303 Linker_histone Myb_DNA-binding
272178 estExt_fgenesh1_kg.C_1140002 Myb_DNA-binding
28918 gw1.0.994.1 Myb_DNA-binding
29451 gw1.4.555.1 Myb_DNA-binding
29850 gw1.4.574.1 Myb_DNA-binding
39481 gw1.20.497.1 Myb_DNA-binding
39499 gw1.0.1540.1 Myb_DNA-binding
39509 gw1.22.289.1 Myb_DNA-binding
39516 gw1.1.1042.1 Myb_DNA-binding
39810 gw1.18.504.1 Myb_DNA-binding
403080 fgenesh2_pg.C_scaffold_0001085 Myb_DNA-binding
406795 fgenesh2_pg.C_scaffold_6000046 Myb_DNA-binding
408692 fgenesh2_pg.C_scaffold_9000065 Myb_DNA-binding
410828 fgenesh2_pg.C_scaffold_13000326 Myb_DNA-binding
413208 fgenesh2_pg.C_scaffold_20000069 Myb_DNA-binding
413266 fgenesh2_pg.C_scaffold_20000127 Linker_histone Myb_DNA-binding
419617 fgenesh2_pg.C_scaffold_43000098 Myb_DNA-binding
420607 fgenesh2_pg.C_scaffold_47000081 Myb_DNA-binding
421179 fgenesh2_pg.C_scaffold_50000068 Myb_DNA-binding
429864 fgenesh2_pg.C_scaffold_121000022 Myb_DNA-binding
439294 estExt_fgenesh2_pg.C_60183 Myb_DNA-binding
442222 estExt_fgenesh2_pg.C_230018 Myb_DNA-binding SWIRM
49296 gw1.59.443.1 Myb_DNA-binding
63207 gw1.11.844.1 Myb_DNA-binding SWIRM ZZ
69727 gw1.7.1380.1 Myb_DNA-binding
72682 gw1.0.2793.1 Myb_DNA-binding
74197 e_gw1.0.1995.1 DnaJ Myb_DNA-binding
78045 e_gw1.2.1408.1 Myb_DNA-binding
78303 e_gw1.2.864.1 Myb_DNA-binding
78396 e_gw1.2.211.1 Myb_DNA-binding
78481 e_gw1.2.652.1 Myb_DNA-binding
78848 e_gw1.2.978.1 Myb_DNA-binding
79245 e_gw1.2.210.1 Myb_DNA-binding
80215 e_gw1.3.908.1 Myb_DNA-binding
84195 e_gw1.6.784.1 Myb_DNA-binding
84280 e_gw1.6.456.1 Myb_DNA-binding
84608 e_gw1.6.787.1 Myb_DNA-binding
90153 e_gw1.11.662.1 Myb_DNA-binding
90981 e_gw1.11.1067.1 Myb_DNA-binding
93784 e_gw1.14.550.1 Myb_DNA-binding
96986 e_gw1.19.368.1 Myb_DNA-binding SWIRM ZZ

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608