Plant Transcription factor database - Universität Potsdam
version: 3.0

Vitis vinifera MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 68 gene models in this family



Gene modelDescriptionDomains
GSVIVP00001485001 Linker_histone Myb_DNA-binding
GSVIVP00002213001 Myb_DNA-binding
GSVIVP00002934001 Myb_DNA-binding SWIRM
GSVIVP00003738001 AT_hook Bromodomain Myb_DNA-binding
GSVIVP00004199001 Linker_histone Myb_DNA-binding
GSVIVP00004704001 Myb_DNA-binding ZZ
GSVIVP00006497001 Myb_DNA-binding
GSVIVP00006915001 Myb_DNA-binding
GSVIVP00007692001 Myb_DNA-binding
GSVIVP00008644001 Myb_DNA-binding
GSVIVP00009898001 Myb_DNA-binding
GSVIVP00009957001 Myb_DNA-binding SWIRM ZZ
GSVIVP00010022001 Myb_DNA-binding
GSVIVP00010586001 Myb_DNA-binding
GSVIVP00010755001 Myb_DNA-binding
GSVIVP00012218001 Myb_DNA-binding
GSVIVP00013475001 Myb_DNA-binding
GSVIVP00014196001 Myb_DNA-binding
GSVIVP00014602001 Myb_DNA-binding
GSVIVP00014609001 Myb_DNA-binding
GSVIVP00015098001 Myb_DNA-binding
GSVIVP00015425001 Myb_DNA-binding SWIRM
GSVIVP00015818001 Myb_DNA-binding efhand
GSVIVP00016181001 Myb_DNA-binding
GSVIVP00016271001 Myb_DNA-binding
GSVIVP00016466001 Myb_DNA-binding
GSVIVP00016470001 Myb_DNA-binding
GSVIVP00016527001 Linker_histone Myb_DNA-binding
GSVIVP00016585001 Myb_DNA-binding
GSVIVP00016622001 Myb_DNA-binding
GSVIVP00017977001 Myb_DNA-binding SWIRM
GSVIVP00019320001 Myb_DNA-binding
GSVIVP00019794001 DIRP Myb_DNA-binding
GSVIVP00022793001 DIRP Myb_DNA-binding
GSVIVP00023066001 Myb_DNA-binding
GSVIVP00023216001 Myb_DNA-binding
GSVIVP00023467001 Myb_DNA-binding
GSVIVP00024297001 Myb_DNA-binding
GSVIVP00024576001 Myb_DNA-binding
GSVIVP00024582001 Myb_DNA-binding
GSVIVP00025556001 Myb_DNA-binding
GSVIVP00026045001 Myb_DNA-binding
GSVIVP00026185001 Myb_DNA-binding
GSVIVP00026895001 Myb_DNA-binding
GSVIVP00028159001 Myb_DNA-binding
GSVIVP00028247001 Myb_DNA-binding
GSVIVP00028808001 Myb_DNA-binding
GSVIVP00028932001 Myb_DNA-binding
GSVIVP00029107001 Myb_DNA-binding SWIRM ZZ
GSVIVP00030071001 DnaJ Myb_DNA-binding
GSVIVP00030811001 Myb_DNA-binding
GSVIVP00032142001 Myb_DNA-binding
GSVIVP00032174001 Myb_DNA-binding zf-CCHC
GSVIVP00032266001 Myb_DNA-binding
GSVIVP00033446001 Myb_DNA-binding
GSVIVP00034106001 Myb_DNA-binding
GSVIVP00034313001 Myb_DNA-binding
GSVIVP00034599001 Myb_DNA-binding
GSVIVP00036339001 Myb_DNA-binding
GSVIVP00036374001 Myb_DNA-binding
GSVIVP00036380001 Myb_DNA-binding
GSVIVP00036402001 Myb_DNA-binding ZZ
GSVIVP00037734001 Myb_DNA-binding
GSVIVP00038755001 Myb_DNA-binding
GSVIVP00038759001 Myb_DNA-binding
GSVIVP00038763001 Myb_DNA-binding
GSVIVP00038766001 Myb_DNA-binding
GSVIVP00038768001 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608