Plant Transcription factor database - Universität Potsdam
version: 3.0

Zea mays MYB-related Family

Description

Martin & Paz-Ares. 1997: The cloning of the first transcription factor from plants, the C1 gene of maize, indicated that plants use transcription factors that are structurally related to those of animals in their control of gene expression, because C1 showed significant structural homology to the vertebrate cellular proto-oncogene c-MYB. Since 1987, the catalogue of MYB-related transcription factors has increased considerably in size due, primarily, to the ever-expanding number of MYB genes identified in higher plants (Arabidopsis thaliana is estimated to contain more than a hundred MYB genes). In vertebrates, the MYB-related proto-oncogenes comprise a small family with a central role in controlling cellular proliferation and commitment to development. However, while the functions of some plant MYB genes are relatively well understood they are, at present, quite distinct from their animal counterparts.

Members of this family
  SHOULD possess Myb_DNA-binding domain
  SHOULD NOT possess ARID G2-like Response_reg SNF2_N trihelix domains

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for the families MYB and MYB-related jointly. The data reported by Yanhui et al. 2006 for A. thaliana were taken as gold standard.

The gold standard reported 198 members for this families, 184 of which are present in ArabTFDB, giving a PPV of 0.88. Fourteen additional members not present in ArabTFDB might be false negatives, giving a Sensitivity of 0.93.

This family is also present in:

References

There are 190 gene models in this family



Gene modelDescriptionDomains
AC187287.3_FGP042 Myb_DNA-binding
AC187910.5_FGP035 Myb_DNA-binding
AC190522.1_FGP046 Myb_DNA-binding
AC191048.2_FGP033 Myb_DNA-binding
AC191253.3_FGP045 Myb_DNA-binding
AC198763.3_FGP048 Myb_DNA-binding
AC203895.3_FGP034 Myb_DNA-binding
AC208787.3_FGP035 Myb_DNA-binding
AC208911.3_FGP036 Myb_DNA-binding
GRMZM2G000296_P01 Myb_DNA-binding
GRMZM2G000818_P02 Myb_DNA-binding
GRMZM2G000954_P01 Myb_DNA-binding
GRMZM2G000954_P02 Myb_DNA-binding
GRMZM2G000954_P04 Myb_DNA-binding
GRMZM2G000954_P05 Myb_DNA-binding
GRMZM2G000954_P06 Myb_DNA-binding
GRMZM2G001223_P02 Myb_DNA-binding
GRMZM2G001530_P01 Myb_DNA-binding
GRMZM2G002128_P02 Myb_DNA-binding
GRMZM2G002238_P01 Myb_DNA-binding
GRMZM2G003890_P01 Myb_DNA-binding
GRMZM2G004090_P01 Myb_DNA-binding
GRMZM2G005106_P01 Myb_DNA-binding
GRMZM2G011163_P02 Myb_DNA-binding
GRMZM2G011163_P03 Myb_DNA-binding
GRMZM2G014534_P01 Myb_DNA-binding
GRMZM2G019921_P01 Linker_histone Myb_DNA-binding
GRMZM2G021468_P01 Myb_DNA-binding
GRMZM2G022499_P01 Bromodomain Myb_DNA-binding
GRMZM2G023667_P01 Linker_histone Myb_DNA-binding
GRMZM2G023752_P01 Myb_DNA-binding
GRMZM2G024054_P01 Myb_DNA-binding
GRMZM2G024054_P03 Myb_DNA-binding
GRMZM2G027914_P01 Myb_DNA-binding
GRMZM2G029850_P02 Myb_DNA-binding
GRMZM2G030403_P01 Myb_DNA-binding
GRMZM2G032180_P01 Myb_DNA-binding
GRMZM2G034110_P01 Myb_DNA-binding
GRMZM2G036512_P02 Myb_DNA-binding
GRMZM2G036747_P01 Myb_DNA-binding
GRMZM2G036747_P02 Myb_DNA-binding
GRMZM2G036747_P03 Myb_DNA-binding
GRMZM2G038220_P01 Myb_DNA-binding SWIRM
GRMZM2G038220_P03 Myb_DNA-binding SWIRM
GRMZM2G038220_P04 Myb_DNA-binding SWIRM
GRMZM2G039063_P01 Myb_DNA-binding
GRMZM2G039143_P01 Myb_DNA-binding
GRMZM2G040411_P05 Myb_DNA-binding
GRMZM2G046438_P01 Myb_DNA-binding
GRMZM2G047038_P01 Myb_DNA-binding SWIRM ZZ
GRMZM2G049695_P01 Myb_DNA-binding
GRMZM2G052984_P01 Bromodomain Myb_DNA-binding
GRMZM2G053412_P01 Myb_DNA-binding
GRMZM2G055094_P01 Myb_DNA-binding
GRMZM2G057408_P01 Myb_DNA-binding
GRMZM2G057408_P02 Myb_DNA-binding
GRMZM2G057955_P01 Myb_DNA-binding
GRMZM2G058726_P01 Myb_DNA-binding
GRMZM2G060199_P02 Myb_DNA-binding
GRMZM2G064328_P01 Myb_DNA-binding SWIRM
GRMZM2G065829_P01 Myb_DNA-binding
GRMZM2G065829_P02 Myb_DNA-binding
GRMZM2G068592_P01 Myb_DNA-binding
GRMZM2G071468_P02 Myb_DNA-binding
GRMZM2G071648_P01 Myb_DNA-binding
GRMZM2G071977_P01 Myb_DNA-binding
GRMZM2G072877_P01 Myb_DNA-binding
GRMZM2G073560_P01 Myb_DNA-binding SWIRM ZZ
GRMZM2G073560_P02 Myb_DNA-binding SWIRM ZZ
GRMZM2G073826_P01 Myb_DNA-binding
GRMZM2G073836_P01 Myb_DNA-binding
GRMZM2G075064_P01 Myb_DNA-binding
GRMZM2G077633_P01 Myb_DNA-binding SWIRM
GRMZM2G077633_P02 Myb_DNA-binding SWIRM
GRMZM2G077789_P02 Myb_DNA-binding
GRMZM2G078636_P01 Myb_DNA-binding
GRMZM2G083670_P01 Myb_DNA-binding
GRMZM2G084950_P01 Myb_DNA-binding
GRMZM2G085618_P02 Myb_DNA-binding
GRMZM2G087817_P01 Linker_histone Myb_DNA-binding
GRMZM2G087817_P02 Linker_histone Myb_DNA-binding
GRMZM2G087817_P03 Linker_histone Myb_DNA-binding
GRMZM2G088524_P01 Myb_DNA-binding
GRMZM2G088524_P02 Myb_DNA-binding
GRMZM2G088809_P01 DIRP Myb_DNA-binding
GRMZM2G088809_P02 DIRP Myb_DNA-binding
GRMZM2G091201_P01 Myb_DNA-binding
GRMZM2G095239_P01 Linker_histone Myb_DNA-binding
GRMZM2G095239_P02 Myb_DNA-binding
GRMZM2G095239_P03 Linker_histone Myb_DNA-binding
GRMZM2G096521_P01 Myb_DNA-binding SWIRM ZZ
GRMZM2G096521_P02 Myb_DNA-binding SWIRM ZZ
GRMZM2G096865_P01 DIRP Myb_DNA-binding
GRMZM2G096865_P02 DIRP Myb_DNA-binding
GRMZM2G096865_P03 DIRP Myb_DNA-binding
GRMZM2G097391_P01 Myb_DNA-binding
GRMZM2G098884_P01 Myb_DNA-binding
GRMZM2G099919_P01 Myb_DNA-binding
GRMZM2G099919_P02 Myb_DNA-binding
GRMZM2G100431_P01 Myb_DNA-binding
GRMZM2G100884_P01 Myb_DNA-binding
GRMZM2G101806_P01 Myb_DNA-binding
GRMZM2G103783_P01 Bromodomain Myb_DNA-binding
GRMZM2G105840_P01 Myb_DNA-binding SWIRM
GRMZM2G106558_P01 Myb_DNA-binding
GRMZM2G108424_P02 Linker_histone Myb_DNA-binding
GRMZM2G111306_P01 Myb_DNA-binding
GRMZM2G111906_P01 Myb_DNA-binding
GRMZM2G112764_P01 Myb_DNA-binding
GRMZM2G114503_P01 Myb_DNA-binding
GRMZM2G115070_P01 Myb_DNA-binding
GRMZM2G118693_P01 Myb_DNA-binding
GRMZM2G118693_P03 Myb_DNA-binding
GRMZM2G119261_P02 Myb_DNA-binding SWIRM
GRMZM2G119261_P03 Myb_DNA-binding SWIRM
GRMZM2G119261_P04 Myb_DNA-binding
GRMZM2G119833_P01 Myb_DNA-binding
GRMZM2G120598_P02 Myb_DNA-binding
GRMZM2G121105_P01 Myb_DNA-binding
GRMZM2G121111_P01 Myb_DNA-binding
GRMZM2G122164_P01 Myb_DNA-binding
GRMZM2G126322_P01 Myb_DNA-binding SWIRM
GRMZM2G127587_P02 Myb_DNA-binding
GRMZM2G127587_P03 Myb_DNA-binding
GRMZM2G127587_P06 Myb_DNA-binding
GRMZM2G129790_P01 Myb_DNA-binding
GRMZM2G129790_P02 Myb_DNA-binding
GRMZM2G129790_P03 Myb_DNA-binding
GRMZM2G129817_P01 Myb_DNA-binding ZZ
GRMZM2G129817_P02 Myb_DNA-binding ZZ
GRMZM2G130149_P03 Myb_DNA-binding
GRMZM2G130149_P05 Myb_DNA-binding
GRMZM2G130149_P06 Myb_DNA-binding
GRMZM2G135052_P01 Myb_DNA-binding
GRMZM2G135410_P01 Myb_DNA-binding SWIRM
GRMZM2G136551_P02 Myb_DNA-binding
GRMZM2G136887_P01 Linker_histone Myb_DNA-binding
GRMZM2G137969_P02 Linker_histone Myb_DNA-binding
GRMZM2G139174_P01 Myb_DNA-binding
GRMZM2G139760_P01 Myb_DNA-binding SWIRM
GRMZM2G139760_P02 Myb_DNA-binding SWIRM
GRMZM2G139760_P03 Myb_DNA-binding SWIRM
GRMZM2G139760_P04 Myb_DNA-binding SWIRM
GRMZM2G140375_P01 Myb_DNA-binding
GRMZM2G143640_P01 Myb_DNA-binding
GRMZM2G145041_P01 Myb_DNA-binding
GRMZM2G148644_P01 DIRP Myb_DNA-binding
GRMZM2G148644_P02 DIRP Myb_DNA-binding
GRMZM2G148742_P01 Myb_DNA-binding
GRMZM2G150260_P01 Myb_DNA-binding
GRMZM2G150272_P01 Myb_DNA-binding
GRMZM2G150680_P02 Myb_DNA-binding
GRMZM2G150841_P02 Myb_DNA-binding
GRMZM2G152319_P01 Myb_DNA-binding
GRMZM2G152319_P02 Myb_DNA-binding
GRMZM2G153306_P01 Myb_DNA-binding
GRMZM2G156402_P01 Myb_DNA-binding
GRMZM2G156402_P02 Myb_DNA-binding
GRMZM2G157060_P01 Myb_DNA-binding
GRMZM2G157306_P01 Myb_DNA-binding
GRMZM2G157306_P02 Myb_DNA-binding
GRMZM2G157306_P03 Myb_DNA-binding
GRMZM2G158879_P01 Myb_DNA-binding
GRMZM2G159686_P02 Myb_DNA-binding
GRMZM2G161512_P05 Myb_DNA-binding
GRMZM2G163291_P02 Linker_histone Myb_DNA-binding
GRMZM2G164839_P01 Myb_DNA-binding
GRMZM2G166244_P01 Myb_DNA-binding
GRMZM2G167475_P01 DIRP Myb_DNA-binding
GRMZM2G167475_P02 DIRP Myb_DNA-binding
GRMZM2G167814_P01 Myb_DNA-binding
GRMZM2G167814_P02 Myb_DNA-binding
GRMZM2G167814_P04 Myb_DNA-binding
GRMZM2G167816_P01 Myb_DNA-binding
GRMZM2G169316_P02 Myb_DNA-binding
GRMZM2G170067_P01 Myb_DNA-binding
GRMZM2G170148_P01 Myb_DNA-binding
GRMZM2G170322_P01 Myb_DNA-binding
GRMZM2G170322_P02 Myb_DNA-binding
GRMZM2G170322_P03 Myb_DNA-binding
GRMZM2G170850_P01 Myb_DNA-binding
GRMZM2G174476_P02 Myb_DNA-binding P_C
GRMZM2G176568_P01 Myb_DNA-binding
GRMZM2G176876_P01 Myb_DNA-binding
GRMZM2G177336_P01 Myb_DNA-binding
GRMZM2G177958_P01 Myb_DNA-binding ZZ
GRMZM2G180017_P01 Myb_DNA-binding
GRMZM2G180017_P02 Myb_DNA-binding
GRMZM2G181030_P01 Myb_DNA-binding
GRMZM2G181032_P01 Myb_DNA-binding

General references

Jin, H; Martin, C. 1999. Multifunctionality and diversity within the plant MYB-gene family. Plant Mol. Biol. 41(5):577-85 PUBMEDID:10645718
Klempnauer, KH; Sippel, AE. 1987. The highly conserved amino-terminal region of the protein encoded by the v-myb oncogene functions as a DNA-binding domain. EMBO J. 6(9):2719-25 PUBMEDID:2824190
Martin, C; Paz-Ares, J. 1997. MYB transcription factors in plants. Trends Genet. 13(2):67-73 PUBMEDID:9055608