Plant Transcription factor database - Universität Potsdam
version: 3.0

Arabidopsis lyrata NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 109 gene models in this family



Gene modelDescriptionDomains
311334 fgenesh1_pm.C_scaffold_1000114 NAM
311447 fgenesh1_pm.C_scaffold_1000227 NAM
313821 fgenesh1_pm.C_scaffold_1002601 NAM
313839 fgenesh1_pm.C_scaffold_1002619 NAM
313859 fgenesh1_pm.C_scaffold_1002639 NAM
315244 fgenesh1_pm.C_scaffold_2000277 NAM
316163 fgenesh1_pm.C_scaffold_2001196 NAM
317848 fgenesh1_pm.C_scaffold_3000864 NAM
324164 fgenesh1_pm.C_scaffold_5001708 NAM
325871 fgenesh1_pm.C_scaffold_6001091 NAM
326242 fgenesh1_pm.C_scaffold_6001462 NAM
326748 fgenesh1_pm.C_scaffold_6001968 NAM
327634 fgenesh1_pm.C_scaffold_6002854 NAM
328786 fgenesh1_pm.C_scaffold_7001013 NAM
332471 fgenesh1_pm.C_scaffold_8001814 NAM
333554 fgenesh1_pg.C_scaffold_1000119 NAM
333558 fgenesh1_pg.C_scaffold_1000123 NAM
335709 fgenesh1_pg.C_scaffold_1002274 NAM
336483 fgenesh1_pg.C_scaffold_1003048 NAM
340623 fgenesh1_pg.C_scaffold_3000386 NAM
344010 fgenesh1_pg.C_scaffold_4000352 NAM
347510 fgenesh1_pg.C_scaffold_5000902 NAM
347836 fgenesh1_pg.C_scaffold_5001228 NAM
352687 fgenesh1_pg.C_scaffold_6003280 NAM
357630 fgenesh1_pg.C_scaffold_8001417 NAM
358128 fgenesh1_pg.C_scaffold_8001915 NAM
471376 fgenesh2_kg.1__1330__AT1G12260.1 NAM
473471 fgenesh2_kg.1__3425__AT1G32870.2 NAM
473504 fgenesh2_kg.1__3458__AT1G33280.1 NAM
473571 fgenesh2_kg.1__3525__AT1G34180.1 NAM
474412 fgenesh2_kg.1__4366__AT1G52880.1 NAM
474413 fgenesh2_kg.1__4367__AT1G52890.1 NAM
474694 fgenesh2_kg.1__4648__AT1G54330.1 NAM
475082 fgenesh2_kg.2__212__AT1G62700.1 NAM
476076 fgenesh2_kg.2__1206__AT1G69490.1 NAM
476799 fgenesh2_kg.2__1929__AT1G76420.1 NAM
477665 fgenesh2_kg.3__366__AT3G04060.1 NAM
477666 fgenesh2_kg.3__367__AT3G04070.1 NAM
478382 fgenesh2_kg.3__1083__AT3G10490.2 NAM
478384 fgenesh2_kg.3__1085__AT3G10500.1 NAM
478652 fgenesh2_kg.3__1353__AT3G12910.1 NAM
478949 fgenesh2_kg.3__1650__AT3G15170.1 NAM
478996 fgenesh2_kg.3__1697__AT3G15500.1 NAM
478997 fgenesh2_kg.3__1698__AT3G15510.1 NAM
480590 fgenesh2_kg.3__3291__AT2G17040.1 NAM
481629 fgenesh2_kg.4__689__AT2G27300.1 NAM
482294 fgenesh2_kg.4__1354__AT2G33480.1 NAM
483400 fgenesh2_kg.4__2460__AT2G43000.1 NAM
484160 fgenesh2_kg.5__152__AT2G02450.1 NAM
484673 fgenesh2_kg.5__665__AT3G29035.1 NAM
486095 fgenesh2_kg.5__2087__AT3G56530.1 NAM
487602 fgenesh2_kg.6__736__AT5G07680.1 NAM
487745 fgenesh2_kg.6__879__AT5G09330.2 NAM
488590 fgenesh2_kg.6__1724__AT5G17260.1 NAM
488703 fgenesh2_kg.6__1837__AT5G18300.1 NAM
489094 fgenesh2_kg.6__2228__AT5G22380.1 NAM
491017 fgenesh2_kg.7__450__AT4G36160.1 NAM
491088 fgenesh2_kg.7__521__AT4G35580.1 NAM
491912 fgenesh2_kg.7__1345__AT4G28530.1 NAM
492058 fgenesh2_kg.7__1491__AT4G27410.3 NAM
494028 fgenesh2_kg.7__3461__AT5G39610.1 NAM
494319 fgenesh2_kg.8__135__AT5G46590.1 NAM
495144 fgenesh2_kg.8__960__AT5G50820.1 NAM
495753 fgenesh2_kg.8__1569__AT5G56620.1 NAM
496302 fgenesh2_kg.8__2118__AT5G61430.1 NAM
496601 fgenesh2_kg.8__2417__AT5G64060.1 NAM
496665 fgenesh2_kg.8__2481__AT5G64530.1 NAM
496976 fgenesh2_kg.8__2792__AT5G66300.1 NAM
857774 Al_scaffold_0007_1273 NAM
858896 Al_scaffold_0007_2395 NAM
860042 Al_scaffold_0007_3541 NAM
860234 Al_scaffold_0007_3733 NAM
861842 Al_scaffold_0006_1351 NAM
863655 Al_scaffold_0006_3164 NAM
865684 Al_scaffold_0005_1163 NAM
866071 Al_scaffold_0005_1550 NAM
871410 Al_scaffold_0003_51 NAM
871619 Al_scaffold_0003_260 NAM
873225 Al_scaffold_0003_1866 NAM
873301 Al_scaffold_0003_1942 NAM
875131 Al_scaffold_0003_3772 NAM
876543 Al_scaffold_0002_1137 NAM
878368 Al_scaffold_0001_135 NAM
878370 Al_scaffold_0001_137 NAM
881355 Al_scaffold_0001_3122 NAM
883225 Al_scaffold_0001_4992 NAM
885551 Al_scaffold_0008_1815 NAM
886649 Al_scaffold_0008_2913 NAM
887272 scaffold_100066.1 NAM
887359 scaffold_100153.1 NAM
887556 scaffold_100350.1 NAM
890145 scaffold_102939.1 NAM
890389 scaffold_103183.1 NAM
893532 scaffold_200606.1 NAM
895634 scaffold_202708.1 NAM
895868 scaffold_202942.1 NAM
897508 scaffold_301478.1 NAM
901538 scaffold_401039.1 NAM
904148 scaffold_403649.1 NAM
905966 scaffold_501670.1 NAM
906244 scaffold_501948.1 NAM
907751 scaffold_503455.1 NAM
908325 scaffold_600382.1 NAM
908859 scaffold_600916.1 NAM
909271 scaffold_601328.1 NAM
910218 scaffold_602275.1 NAM
912076 scaffold_604133.1 NAM
918048 scaffold_801448.1 NAM
919094 scaffold_802494.1 NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345