Plant Transcription factor database - Universität Potsdam
version: 3.0

Carica papaya NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 70 gene models in this family



Gene modelDescriptionDomains
evm.TU.supercontig_1.106 NAM
evm.TU.supercontig_1.140 NAM
evm.TU.supercontig_1.49 NAM
evm.TU.supercontig_10.22 NAM
evm.TU.supercontig_104.90 NAM
evm.TU.supercontig_106.75 NAM
evm.TU.supercontig_11.53 NAM
evm.TU.supercontig_111.23 NAM
evm.TU.supercontig_113.17 NAM
evm.TU.supercontig_113.34 NAM
evm.TU.supercontig_118.24 NAM
evm.TU.supercontig_12.159 NAM
evm.TU.supercontig_128.20 NAM
evm.TU.supercontig_131.86 NAM
evm.TU.supercontig_14.2 NAM
evm.TU.supercontig_14.99 NAM
evm.TU.supercontig_165.12 NAM
evm.TU.supercontig_17.26 NAM
evm.TU.supercontig_178.33 NAM
evm.TU.supercontig_192.18 NAM
evm.TU.supercontig_195.12 NAM
evm.TU.supercontig_195.31 NAM
evm.TU.supercontig_202.9 NAM
evm.TU.supercontig_244.7 NAM
evm.TU.supercontig_2586.1 NAM
evm.TU.supercontig_26.137 NAM
evm.TU.supercontig_27.81 NAM
evm.TU.supercontig_286.12 NAM
evm.TU.supercontig_29.116 NAM
evm.TU.supercontig_3.174 NAM
evm.TU.supercontig_3.313 NAM
evm.TU.supercontig_3.501 NAM
evm.TU.supercontig_320.2 NAM
evm.TU.supercontig_33.188 NAM
evm.TU.supercontig_33.189 NAM
evm.TU.supercontig_37.110 NAM
evm.TU.supercontig_37.27 NAM
evm.TU.supercontig_37.89 NAM
evm.TU.supercontig_38.35 NAM
evm.TU.supercontig_4.129 NAM
evm.TU.supercontig_4056.1 NAM
evm.TU.supercontig_42.143 NAM
evm.TU.supercontig_42.165 NAM
evm.TU.supercontig_435.1 NAM
evm.TU.supercontig_53.115 NAM
evm.TU.supercontig_53.165 NAM
evm.TU.supercontig_566.3 NAM
evm.TU.supercontig_57.69 NAM
evm.TU.supercontig_594.1 NAM
evm.TU.supercontig_6.222 NAM
evm.TU.supercontig_63.35 NAM
evm.TU.supercontig_64.112 NAM
evm.TU.supercontig_67.57 NAM
evm.TU.supercontig_70.106 NAM
evm.TU.supercontig_78.38 NAM
evm.TU.supercontig_80.14 NAM
evm.TU.supercontig_80.19 NAM
evm.TU.supercontig_80.20 NAM
evm.TU.supercontig_80.21 NAM
evm.TU.supercontig_80.22 NAM
evm.TU.supercontig_80.24 NAM
evm.TU.supercontig_80.25 NAM
evm.TU.supercontig_80.95 NAM
evm.TU.supercontig_80.96 NAM
evm.TU.supercontig_83.99 NAM
evm.TU.supercontig_84.40 NAM
evm.TU.supercontig_90.41 NAM
evm.TU.supercontig_94.22 NAM
evm.TU.supercontig_94.50 NAM
evm.TU.supercontig_99.62 NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345