Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 145 gene models in this family



Gene modelDescriptionDomains
OsIBCD000030 Chr01_49,1020,,,1,1020, NAM
OsIBCD000032 Chr01_51,996,,,1,996, NAM
OsIBCD000036 Chr01_56,963,,,1,963, NAM
OsIBCD000598 Chr01_893,1482,,,1,1482, NAM
OsIBCD001057 Chr01_1547,1470,,,1,1470, NAM
OsIBCD001529 Chr01_2295,1713,,,1,1713, NAM
OsIBCD001882 Chr01_2925,1002,,,1,1002, NAM
OsIBCD002868 Chr01_4522,1113,,,1,1113, NAM
OsIBCD003666 Chr01_5655,1206,,,1,1206, NAM
OsIBCD003695 Chr01_5694,951,,,1,951, NAM
OsIBCD003962 Chr01_6104,855,,,1,855, NAM
OsIBCD004091 Chr01_6295,912,,,1,912, NAM
OsIBCD004117 Chr01_6330,1398,,,1,1398, NAM
OsIBCD004118 Chr01_6331,1398,,,1,1398, NAM
OsIBCD004350 Chr01_6654,687,,,1,687, NAM
OsIBCD004924 Chr02_285,966,,,1,966, NAM
OsIBCD005178 Chr02_687,780,,,1,780, NAM
OsIBCD005519 Chr02_1155,759,,,1,759, NAM
OsIBCD005720 Chr02_1462,1101,,,1,1101, NAM
OsIBCD006845 Chr02_3463,627,,,1,627, NAM
OsIBCD006984 Chr02_3675,1080,,,1,1080, NAM
OsIBCD007065 Chr02_3789,1218,,,1,1218, NAM
OsIBCD007378 Chr02_4252,1167,,,1,1167, NAM
OsIBCD007957 Chr02_5105,1152,,,1,1152, NAM
OsIBCD008351 Chr02_5657,1011,,,1,1011, NAM
OsIBCD008440 Chr02_5764,1902,,,1,1902, NAM
OsIBCD008597 Chr03_107,888,,,1,888, NAM
OsIBCD008663 Chr03_190,1953,,,1,1953, NAM
OsIBCD008713 Chr03_255,1101,,,1,1101, NAM
OsIBCD008756 Chr03_306,951,,,1,951, NAM
OsIBCD009308 Chr03_1074,753,,,1,753, NAM
OsIBCD010002 Chr03_2049,1077,,,1,1077, NAM
OsIBCD010984 Chr03_3782,1215,,,1,1215, NAM
OsIBCD011236 Chr03_4252,972,,,1,972, NAM
OsIBCD012131 Chr03_5591,1101,,,1,1101, NAM
OsIBCD012380 Chr03_5920,1374,,,1,1374, NAM
OsIBCD012383 Chr03_5925,1377,,,1,1377, NAM
OsIBCD012399 Chr03_5955,945,,,1,945, NAM
OsIBCD012497 Chr03_6077,861,,,1,861, NAM
OsIBCD012566 Chr03_6174,1305,,,1,1305, NAM
OsIBCD014406 Chr04_2906,483,,,1,483, NAM
OsIBCD014458 Chr04_2981,2292,,,1,2292, NAM Oxidored_FMN UPF0287
OsIBCD014570 Chr04_3142,1032,,,1,1032, NAM
OsIBCD014700 Chr04_3317,2901,,,1,2901, NAM PPR
OsIBCD014976 Chr04_3697,837,,,1,837, NAM
OsIBCD015090 Chr04_3868,996,,,1,996, NAM
OsIBCD015608 Chr04_4613,600,,,1,600, NAM
OsIBCD015620 Chr04_4636,1005,,,1,1005, NAM
OsIBCD016121 Chr04_5319,1203,,,1,1203, NAM
OsIBCD016723 Chr05_901,1263,,,1,1263, NAM
OsIBCD018014 Chr05_3206,930,,,1,930, NAM
OsIBCD018033 Chr05_3234,1245,,,1,1245, NAM
OsIBCD018051 Chr05_3256,492,,,1,492, NAM
OsIBCD018079 Chr05_3297,1599,,,1,1599, NAM
OsIBCD018173 Chr05_3452,879,,,1,879, NAM
OsIBCD018605 Chr05_4106,1446,,,1,1446, NAM
OsIBCD018881 Chr05_4490,942,,,1,942, NAM
OsIBCD019108 Chr06_15,1821,,,1,1821, NAM
OsIBCD019127 Chr06_37,1095,,,1,1095, NAM
OsIBCD019289 Chr06_310,1188,,,1,1188, NAM
OsIBCD020098 Chr06_1523,1395,,,1,1395, NAM
OsIBCD020488 Chr06_2201,1122,,,1,1122, NAM
OsIBCD020942 Chr06_3096,1134,,,1,1134, NAM
OsIBCD021069 Chr06_3344,1428,,,1,1428, NAM
OsIBCD021770 Chr06_4410,882,,,1,882, NAM
OsIBCD022299 Chr07_324,1032,,,1,1032, NAM
OsIBCD023921 Chr07_3135,1278,,,1,1278, NAM
OsIBCD024628 Chr07_4165,1035,,,1,1035, NAM
OsIBCD024634 Chr07_4178,906,,,1,906, NAM
OsIBCD024736 Chr08_35,882,,,1,882, NAM
OsIBCD024739 Chr08_38,342,,,1,342, NAM
OsIBCD024805 Chr08_136,1209,,,1,1209, NAM
OsIBCD024817 Chr08_149,273,,,1,273, NAM
OsIBCD024819 Chr08_154,1203,,,1,1203, NAM
OsIBCD025045 Chr08_522,2217,,,1,2217, NAM
OsIBCD025304 Chr08_909,867,,,1,867, NAM
OsIBCD026060 Chr08_2333,1134,,,1,1134, NAM
OsIBCD026613 Chr08_3309,1014,,,1,1014, NAM
OsIBCD026632 Chr08_3335,585,,,1,585, NAM zf-C3HC4
OsIBCD026634 Chr08_3340,1158,,,1,1158, NAM
OsIBCD027054 Chr08_4023,1023,,,1,1023, NAM
OsIBCD027223 Chr08_4269,699,,,1,699, NAM
OsIBCD027428 Chr08_4546,1971,,,1,1971, NAM
OsIBCD027947 Chr09_1016,1635,,,1,1635, NAM
OsIBCD028529 Chr09_1949,879,,,1,879, NAM
OsIBCD028981 Chr09_2669,4074,,,1,4074, DUF143 DnaJ NAM
OsIBCD028998 Chr09_2688,1056,,,1,1056, NAM
OsIBCD029076 Chr09_2786,738,,,1,738, NAM
OsIBCD029336 Chr09_3159,1101,,,1,1101, NAM
OsIBCD029337 Chr09_3160,660,,,1,660, NAM
OsIBCD029879 Chr10_688,1539,,,1,1539, NAM
OsIBCD030168 Chr10_1239,8415,,,1,8415, DIL IQ Myosin_head NAM rve
OsIBCD030249 Chr10_1387,1221,,,1,1221, NAM
OsIBCD030467 Chr10_1759,528,,,1,528, NAM
OsIBCD030469 Chr10_1761,519,,,1,519, NAM
OsIBCD030500 Chr10_1823,840,,,1,840, NAM
OsIBCD030502 Chr10_1826,1233,,,1,1233, NAM
OsIBCD030555 Chr10_1909,1251,,,1,1251, NAM
OsIBCD030560 Chr10_1914,1389,,,1,1389, NAM
OsIBCD030563 Chr10_1917,1632,,,1,1632, NAM
OsIBCD030962 Chr10_2539,804,,,1,804, NAM
OsIBCD031299 Chr10_3034,495,,,1,495, NAM
OsIBCD031530 Chr10_3365,981,,,1,981, NAM
OsIBCD031710 Chr11_178,1155,,,1,1155, NAM
OsIBCD031711 Chr11_179,1056,,,1,1056, NAM
OsIBCD031714 Chr11_182,1080,,,1,1080, NAM
OsIBCD031877 Chr11_430,885,,,1,885, NAM
OsIBCD032047 Chr11_699,993,,,1,993, NAM
OsIBCD032056 Chr11_710,993,,,1,993, NAM
OsIBCD032154 Chr11_873,1335,,,1,1335, NAM
OsIBCD032944 Chr11_2305,903,,,1,903, NAM
OsIBCD032945 Chr11_2306,897,,,1,897, NAM
OsIBCD032946 Chr11_2307,849,,,1,849, NAM
OsIBCD032947 Chr11_2310,798,,,1,798, NAM
OsIBCD032949 Chr11_2312,882,,,1,882, NAM
OsIBCD033913 Chr12_245,645,,,1,645, NAM
OsIBCD033915 Chr12_249,1161,,,1,1161, NAM
OsIBCD033916 Chr12_250,1200,,,1,1200, NAM
OsIBCD033988 Chr12_347,1746,,,1,1746, Abhydrolase_3 NAM
OsIBCD034029 Chr12_414,951,,,1,951, Jacalin NAM
OsIBCD034925 Chr12_2040,783,,,1,783, NAM
OsIBCD035628 Chr12_3120,2382,,,1,2382, NAM
OsIBCD035631 Chr12_3123,993,,,1,993, NAM
OsIBCD035746 Chr12_3288,1122,,,1,1122, NAM
OsIBCD036707 Chr01_4551,882,,,1,882, NAM
OsIBCD039125 Chr03_3797,1503,,,1,1503, NAM
OsIBCD039564 Chr03_6065,975,,,1,975, NAM
OsIBCD039588 Chr03_6175,951,,,1,951, NAM
OsIBCD040616 Chr04_5295,873,,,1,873, NAM
OsIBCD041047 Chr05_2399,1704,,,1,1704, NAM
OsIBCD042508 Chr06_4823,879,,,1,879, NAM
OsIBCD042717 Chr07_811,1995,,,1,1995, NAM
OsIBCD042720 Chr07_818,2112,,,1,2112, NAM
OsIBCD042723 Chr07_823,2037,,,1,2037, NAM
OsIBCD042781 Chr07_1098,831,,,1,831, NAM
OsIBCD042806 Chr07_1241,1125,,,1,1125, NAM
OsIBCD042856 Chr07_1525,1818,,,1,1818, NAM
OsIBCD042968 Chr07_2166,2331,,,1,2331, NAM
OsIBCD042969 Chr07_2167,1923,,,1,1923, NAM
OsIBCD043787 Chr08_2337,1329,,,1,1329, NAM
OsIBCD046448 Chr12_517,924,,,1,924, NAM
OsIBCD046490 Chr12_703,1665,,,1,1665, NAM
OsIBCD046619 Chr12_1524,1005,,,1,1005, NAM
OsIBCD046632 Chr12_1569,1254,,,1,1254, NAM
OsIBCD046634 Chr12_1578,1302,,,1,1302, NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345