Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 147 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g01430.1 No apical meristem protein, putative, expressed NAM
LOC_Os01g01470.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g09550.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g09550.2 no apical meristem protein, putative, expressed NAM
LOC_Os01g15640.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g29840.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g48130.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g48130.2 no apical meristem protein, putative, expressed NAM
LOC_Os01g48446.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g59640.1 no apical meristem protein, putative NAM
LOC_Os01g60020.1 NAC domain transcription factor, putative, expressed NAM
LOC_Os01g64310.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g64310.2 no apical meristem protein, putative, expressed NAM
LOC_Os01g66120.1 No apical meristem protein, putative, expressed NAM
LOC_Os01g66120.3 No apical meristem protein, putative, expressed NAM
LOC_Os01g66490.1 no apical meristem protein, putative, expressed NAM
LOC_Os01g70110.1 No apical meristem protein, putative, expressed NAM
LOC_Os02g06950.1 no apical meristem protein, putative NAM
LOC_Os02g12310.1 no apical meristem protein, putative, expressed NAM
LOC_Os02g15340.1 no apical meristem protein, putative, expressed NAM
LOC_Os02g34970.1 no apical meristem protein, putative, expressed NAM
LOC_Os02g36880.1 No apical meristem protein, putative, expressed NAM
LOC_Os02g36880.2 No apical meristem protein, putative, expressed NAM
LOC_Os02g36880.3 No apical meristem protein, putative, expressed NAM
LOC_Os02g36880.4 No apical meristem protein, putative, expressed NAM
LOC_Os02g38130.1 no apical meristem protein, putative, expressed NAM
LOC_Os02g41450.1 no apical meristem protein, putative NAM
LOC_Os02g42970.1 NAC domain containing protein, putative NAM
LOC_Os02g56600.1 no apical meristem protein, putative, expressed NAM
LOC_Os02g57650.1 No apical meristem protein, putative, expressed NAM
LOC_Os03g01870.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g02800.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g03540.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g04070.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g12120.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g21030.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g21060.1 No apical meristem protein, putative, expressed NAM
LOC_Os03g39050.1 no apical meristem protein NAM
LOC_Os03g39100.1 no apical meristem protein NAM
LOC_Os03g42630.1 No apical meristem protein, putative, expressed NAM
LOC_Os03g56580.1 no apical meristem protein, putative, expressed NAM
LOC_Os03g59730.1 No apical meristem protein, putative NAM
LOC_Os03g60080.1 NAC domain-containing protein 67, putative, expressed NAM
LOC_Os03g61249.1 RD26, putative NAM
LOC_Os03g61319.1 RD26, putative NAM
LOC_Os03g62470.1 no apical meristem protein, putative NAM
LOC_Os04g35660.1 no apical meristem protein, putative, expressed NAM
LOC_Os04g38720.1 no apical meristem protein, putative, expressed NAM
LOC_Os04g43560.1 no apical meristem protein, putative, expressed NAM
LOC_Os04g52810.1 no apical meristem protein, putative, expressed NAM
LOC_Os04g59470.1 no apical meristem protein, putative, expressed NAM
LOC_Os05g10620.1 no apical meristem protein, putative, expressed NAM
LOC_Os05g10620.2 no apical meristem protein, putative, expressed NAM
LOC_Os05g10620.3 no apical meristem protein, putative, expressed NAM
LOC_Os05g25960.1 no apical meristem protein NAM
LOC_Os05g34310.1 no apical meristem protein, putative, expressed NAM
LOC_Os05g34600.1 no apical meristem protein, putative, expressed NAM
LOC_Os05g34830.1 No apical meristem protein, putative, expressed NAM
LOC_Os05g34830.2 No apical meristem protein, putative, expressed NAM
LOC_Os05g34830.3 No apical meristem protein, putative, expressed NAM
LOC_Os05g35170.1 no apical meristem protein, putative, expressed NAM
LOC_Os05g35170.2 no apical meristem protein, putative, expressed NAM
LOC_Os05g35170.3 no apical meristem protein, putative, expressed NAM
LOC_Os05g35170.4 no apical meristem protein, putative, expressed NAM
LOC_Os05g35170.5 no apical meristem protein, putative, expressed NAM
LOC_Os05g37080.1 No apical meristem protein, putative, expressed NAM
LOC_Os05g43960.1 no apical meristem protein, putative, expressed NAM
LOC_Os05g48850.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g01230.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g01230.2 no apical meristem protein, putative, expressed NAM
LOC_Os06g01480.1 NAC domain containing protein, putative, expressed NAM
LOC_Os06g04090.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g15690.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g23650.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g33940.1 NAC domain containing protein, putative, expressed NAM
LOC_Os06g36480.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g46270.1 no apical meristem protein, putative, expressed NAM
LOC_Os06g51070.1 no apical meristem protein, putative, expressed NAM
LOC_Os07g04560.1 no apical meristem protein, putative NAM
LOC_Os07g09740.1 no apical meristem protein NAM
LOC_Os07g09830.1 no apical meristem protein NAM
LOC_Os07g09860.1 no apical meristem protein NAM
LOC_Os07g12340.1 NAC domain-containing protein 67, putative, expressed NAM
LOC_Os07g13920.1 no apical meristem protein NAM
LOC_Os07g17180.1 no apical meristem protein, expressed NAM
LOC_Os07g27330.1 no apical meristem protein, expressed NAM
LOC_Os07g27340.1 No apical meristem protein, putative NAM
LOC_Os07g37920.1 no apical meristem protein, putative, expressed NAM
LOC_Os07g48450.1 no apical meristem protein, putative, expressed NAM
LOC_Os07g48550.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g01330.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g02160.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g02300.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g06140.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g06140.2 no apical meristem protein, putative, expressed NAM
LOC_Os08g06140.3 no apical meristem protein, putative, expressed NAM
LOC_Os08g10080.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g23880.1 No apical meristem protein, putative NAM
LOC_Os08g33670.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g33910.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g40030.1 CUP-SHAPED COTYLEDON3, putative, expressed NAM
LOC_Os08g42400.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g42400.2 no apical meristem protein, putative, expressed NAM
LOC_Os08g42400.3 no apical meristem protein, putative, expressed NAM
LOC_Os08g44820.1 no apical meristem protein, putative, expressed NAM
LOC_Os08g44820.2 no apical meristem protein, putative, expressed NAM
LOC_Os08g44820.3 no apical meristem protein, putative, expressed NAM
LOC_Os09g12380.1 no apical meristem protein, putative, expressed NAM
LOC_Os09g24560.1 No apical meristem protein, putative, expressed NAM
LOC_Os09g32040.1 no apical meristem protein, putative, expressed NAM
LOC_Os09g32260.1 no apical meristem protein, putative, expressed NAM
LOC_Os09g32260.2 no apical meristem protein, putative, expressed NAM
LOC_Os09g33490.1 no apical meristem protein, putative, expressed NAM
LOC_Os09g38000.1 no apical meristem protein, putative NAM
LOC_Os09g38010.1 no apical meristem protein, putative, expressed NAM
LOC_Os09g38010.2 no apical meristem protein, putative, expressed NAM
LOC_Os10g09820.1 no apical meristem protein, putative NAM
LOC_Os10g21560.1 no apical meristem protein, putative, expressed NAM
LOC_Os10g25620.1 no apical meristem protein, expressed NAM
LOC_Os10g25640.1 no apical meristem protein, putative NAM
LOC_Os10g26240.1 no apical meristem protein, putative NAM
LOC_Os10g26270.1 no apical meristem protein NAM
LOC_Os10g27360.1 no apical meristem protein, putative, expressed NAM
LOC_Os10g27390.1 no apical meristem protein, putative, expressed NAM
LOC_Os10g33760.1 No apical meristem protein, putative, expressed NAM
LOC_Os10g38834.1 no apical meristem protein, putative, expressed NAM
LOC_Os10g42130.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g03300.1 NAC domain transcription factor, putative, expressed NAM
LOC_Os11g03310.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g03370.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g04960.1 no apical meristem protein, putative NAM
LOC_Os11g05614.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g08210.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g31330.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g31340.1 no apical meristem protein, putative, expressed NAM
LOC_Os11g31360.1 no apical meristem protein, putative NAM
LOC_Os11g31380.1 no apical meristem protein, putative NAM
LOC_Os12g03040.1 no apical meristem protein, putative, expressed NAM
LOC_Os12g03050.1 no apical meristem protein, putative, expressed NAM
LOC_Os12g05990.1 No apical meristem protein, putative, expressed NAM
LOC_Os12g07790.1 no apical meristem protein, putative NAM
LOC_Os12g22630.1 retrotransposon protein, putative, unclassified, expressed NAM
LOC_Os12g22940.1 no apical meristem protein, putative NAM
LOC_Os12g23090.1 no apical meristem protein, putative NAM
LOC_Os12g29330.1 no apical meristem protein, putative, expressed NAM
LOC_Os12g41680.1 No apical meristem protein, putative, expressed NAM
LOC_Os12g43530.1 no apical meristem protein, putative NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345

Specific references

Ooka, H; Satoh, K; Doi, K; Nagata, T; Otomo, Y; Murakami, K; Matsubara, K; Osato, N; Kawai, J; Carninci, P; Hayashizaki, Y; Suzuki, K; Kojima, K; Takahara, Y; Yamamoto, K; Kikuchi, S. 2003. Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana. DNA Res. 10(6):239-47 PUBMEDID:15029955