Plant Transcription factor database - Universität Potsdam
version: 3.0

Physcomitrella patens NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 32 gene models in this family



Gene modelDescriptionDomains
112854 e_gw1.5.134.1 NAM
114556 e_gw1.10.139.1 NAM
116232 e_gw1.15.275.1 NAM
123370 e_gw1.44.97.1 NAM
128437 e_gw1.70.85.1 NAM
135141 e_gw1.117.35.1 NAM
137756 e_gw1.140.53.1 NAM
139708 e_gw1.159.34.1 NAM
139922 e_gw1.161.49.1 NAM
140198 e_gw1.164.23.1 NAM
140222 e_gw1.164.26.1 NAM
140223 e_gw1.164.18.1 NAM
143409 e_gw1.201.156.1 NAM
145456 e_gw1.227.43.1 NAM
147407 e_gw1.259.4.1 NAM
147408 e_gw1.259.28.1 NAM
147444 e_gw1.259.32.1 NAM
148520 e_gw1.279.28.1 NAM
149044 e_gw1.288.15.1 NAM
151057 e_gw1.327.11.1 NAM
17919 gw1.73.63.1 NAM
181032 estExt_gwp_gw1.C_460173 NAM
194709 estExt_gwp_gw1.C_2230002 NAM
26565 gw1.8.110.1 NAM
37490 gw1.4.246.1 NAM
46369 gw1.251.65.1 NAM
48901 gw1.77.154.1 NAM
48967 gw1.42.242.1 NAM
49725 gw1.304.62.1 NAM
53615 gw1.6.394.1 NAM
53616 gw1.1.690.1 NAM
89372 fgenesh1_pg.scaffold_182000024 NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345