Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 167 gene models in this family



Gene modelDescriptionDomains
172898 gw1.I.1498.1 NAM
174018 gw1.I.2618.1 NAM
176885 gw1.I.5485.1 NAM
177029 gw1.I.5629.1 NAM
179690 gw1.I.8290.1 NAM
197879 gw1.IV.2968.1 NAM
199890 gw1.IX.355.1 NAM
203112 gw1.IX.3577.1 NAM
203115 gw1.IX.3580.1 NAM
205322 gw1.V.723.1 NAM
205893 gw1.V.1294.1 NAM
206821 gw1.V.2222.1 NAM
208135 gw1.V.3536.1 NAM
208310 gw1.V.3711.1 NAM
217043 gw1.VII.1348.1 NAM
217174 gw1.VII.1479.1 NAM
218367 gw1.VII.2672.1 NAM
218417 gw1.VII.2722.1 NAM
219576 gw1.VII.3881.1 NAM
225667 gw1.X.364.1 NAM
226369 gw1.X.1066.1 NAM
226620 gw1.X.1317.1 NAM
228184 gw1.X.2881.1 NAM
228193 gw1.X.2890.1 NAM
232856 gw1.XI.836.1 NAM
232967 gw1.XI.947.1 NAM
235786 gw1.XI.3766.1 NAM
241663 gw1.XIII.1912.1 NAM
241675 gw1.XIII.1924.1 NAM
242940 gw1.XIII.3189.1 NAM
244264 gw1.XIV.1007.1 NAM
244267 gw1.XIV.1010.1 NAM
245162 gw1.XIV.1905.1 NAM
245234 gw1.XIV.1977.1 NAM
248555 gw1.XIX.955.1 NAM
248563 gw1.XIX.963.1 NAM
249692 gw1.XIX.2092.1 NAM
250693 gw1.XV.129.1 NAM
251284 gw1.XV.720.1 NAM
252879 gw1.XV.2315.1 NAM
253429 gw1.XV.2865.1 NAM
255834 gw1.XVI.1773.1 NAM
256477 gw1.XVI.2416.1 NAM
256483 gw1.XVI.2422.1 NAM
256841 gw1.XVI.2780.1 NAM
259066 gw1.XVII.1057.1 NAM
262305 gw1.XVIII.2846.1 NAM
263377 gw1.107.10.1 NAM
264591 gw1.118.79.1 NAM
265732 gw1.122.151.1 NAM
271100 gw1.145.134.1 NAM
271582 gw1.147.150.1 NAM
272783 gw1.15270.1.1 NAM
274761 gw1.167.26.1 NAM
277204 gw1.193.54.1 NAM
277650 gw1.1992.2.1 NAM
278903 gw1.212.47.1 NAM
278921 gw1.212.65.1 NAM
278983 gw1.212.127.1 NAM
281164 gw1.2712.2.1 NAM
281994 gw1.28.568.1 NAM
289147 gw1.44.360.1 NAM
294486 gw1.6921.4.1 NAM
294599 gw1.70.52.1 NAM
297348 gw1.86.239.1 NAM
298103 gw1.88.225.1 NAM
409622 gw1.II.957.1 NAM
409623 gw1.II.958.1 NAM
409624 gw1.II.959.1 NAM
410778 gw1.II.2113.1 NAM
412088 gw1.II.3423.1 NAM
413359 gw1.III.462.1 NAM
413761 gw1.III.864.1 NAM
415062 gw1.III.2165.1 NAM
415147 gw1.III.2250.1 NAM
416560 gw1.VI.933.1 NAM
417451 gw1.VI.1824.1 NAM
420074 gw1.VIII.1502.1 NAM
421349 gw1.VIII.2777.1 NAM
421626 gw1.XII.86.1 NAM
421750 gw1.XII.210.1 NAM
422786 gw1.XII.1246.1 NAM
423884 gw1.29.396.1 NAM
424084 gw1.57.51.1 NAM
549020 eugene3.00011461 NAM
551262 eugene3.00020577 NAM
552117 eugene3.00021432 NAM
552119 eugene3.00021434 NAM
556187 eugene3.00040900 NAM
556406 eugene3.00041119 NAM
558471 eugene3.00050086 NAM
560311 eugene3.00060270 NAM
562182 eugene3.00070120 NAM
567139 eugene3.00101697 NAM
569635 eugene3.00120288 NAM
569637 eugene3.00120290 NAM
572482 eugene3.00140527 NAM
572484 eugene3.00140529 NAM
574637 eugene3.00150032 NAM
574807 eugene3.00150202 NAM
580397 eugene3.01200082 NAM
580398 eugene3.01200083 NAM
580954 eugene3.01240095 NAM
581037 eugene3.01250035 NAM
583893 eugene3.01550060 LRR_1 LRR_3 NAM NB-ARC TIR
584813 eugene3.01670015 NAM
588195 eugene3.23360001 NAM
591334 eugene3.03790002 NAM
591981 eugene3.00400326 NAM
592235 eugene3.00410078 NAM
592444 eugene3.42540002 NAM
594504 eugene3.00640092 NAM
643591 grail3.0003068301 NAM
647737 grail3.0093008801 NAM
648196 grail3.0038015501 NAM
654710 grail3.0011008901 NAM
660994 grail3.0014014001 NAM
663889 grail3.0035010701 NAM
670113 grail3.0107006501 NAM
674296 grail3.0187000301 NAM
677746 grail3.0040013502 NAM
707094 estExt_Genewise1_v1.C_LG_I3228 NAM
708790 estExt_Genewise1_v1.C_LG_I7833 NAM
713423 estExt_Genewise1_v1.C_LG_IV1433 NAM
714847 estExt_Genewise1_v1.C_LG_V0549 NAM
720167 estExt_Genewise1_v1.C_LG_VIII0754 NAM
728432 estExt_Genewise1_v1.C_LG_XI3994 NAM
751969 fgenesh4_pg.C_LG_I001572 NAM
754356 fgenesh4_pg.C_LG_II000536 NAM
755466 fgenesh4_pg.C_LG_II001646 NAM
756574 fgenesh4_pg.C_LG_III000116 NAM
758848 fgenesh4_pg.C_LG_IV000476 NAM
760174 fgenesh4_pg.C_LG_V000226 NAM
760326 fgenesh4_pg.C_LG_V000378 NAM
762116 fgenesh4_pg.C_LG_VI000426 NAM
762963 fgenesh4_pg.C_LG_VI001273 NAM
763276 fgenesh4_pg.C_LG_VI001586 NAM
763840 fgenesh4_pg.C_LG_VII000185 NAM
767207 fgenesh4_pg.C_LG_IX000258 NAM
767837 fgenesh4_pg.C_LG_IX000888 NAM
771836 fgenesh4_pg.C_LG_XI000989 NAM
772506 fgenesh4_pg.C_LG_XII000281 NAM
773236 fgenesh4_pg.C_LG_XII001011 NAM
773505 fgenesh4_pg.C_LG_XII001280 NAM
775640 fgenesh4_pg.C_LG_XV000068 NAM
776949 fgenesh4_pg.C_LG_XVI000191 NAM
782219 fgenesh4_pg.C_scaffold_64000081 NAM
782225 fgenesh4_pg.C_scaffold_64000087 NAM
783587 fgenesh4_pg.C_scaffold_107000083 NAM
784383 fgenesh4_pg.C_scaffold_127000044 NAM
788764 fgenesh4_pg.C_scaffold_379000002 NAM
788767 fgenesh4_pg.C_scaffold_379000005 NAM
791669 fgenesh4_pg.C_scaffold_2712000001 NAM
793063 fgenesh4_pg.C_scaffold_5651000001 NAM
797511 fgenesh4_pm.C_LG_I000514 NAM
800928 fgenesh4_pm.C_LG_V000020 NAM
806249 fgenesh4_pm.C_LG_XII000069 NAM
816575 estExt_fgenesh4_pg.C_LG_II1399 NAM
820459 estExt_fgenesh4_pg.C_LG_VIII0685 NAM
821600 estExt_fgenesh4_pg.C_LG_IX1366 NAM
822781 estExt_fgenesh4_pg.C_LG_XI0289 NAM
823931 estExt_fgenesh4_pg.C_LG_XIV0205 NAM
827160 estExt_fgenesh4_pg.C_640203 NAM
827560 estExt_fgenesh4_pg.C_880059 NAM
830927 estExt_fgenesh4_pm.C_LG_III0561 NAM
831513 estExt_fgenesh4_pm.C_LG_V0368 NAM
835707 estExt_fgenesh4_pm.C_LG_XVII0129 NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345