Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor NAC Family

Description

Olsen et al. 2005: NAC proteins constitute one of the largest families of plant-specific transcription factors, and the family is present in a wide range of land plants. Here, we summarize the biological and molecular functions of the NAC family, paying particular attention to the intricate regulation of NAC protein level and localization, and to the first indications of NAC participation in transcription factor networks. The recent determination of the DNA and protein binding NAC domain structure offers insight into the molecular functions of the protein family. Research into NAC transcription factors has demonstrated the importance of this protein family in the biology of plants and the need for further studies.

Members of this family
  SHOULD possess NAM domain

Domain alignments

Benchmark against A. thaliana

The Sensitivity and Positive Predictive Value (PPV) were assessed for this family. The data reported by Ooka et al. 2003 for A. thaliana were taken as gold standard.

The gold standard reported 100 members for this family, 100 of which are present in ArabTFDB, giving a PPV of 0.99 and a Senstivity of 1.00.

This family is also present in:

References

There are 112 gene models in this family



Gene modelDescriptionDomains
127231 fgenesh1_pm.C_chr_4000534 NAM
142221 estExt_fgenesh1_pm.C_chr_11213 NAM
144914 estExt_fgenesh1_pm.C_chr_41156 NAM
148372 estExt_fgenesh1_kg.C_chr_30362 NAM
148633 estExt_fgenesh1_kg.C_chr_40190 NAM
148839 estExt_fgenesh1_kg.C_chr_50023 NAM
149020 estExt_fgenesh1_kg.C_chr_60071 NAM
3990732 gw1.6.557.1 NAM
3990848 gw1.6.568.1 NAM
4002383 gw1.5.1538.1 NAM
4004048 gw1.5.1672.1 NAM
4010464 gw1.9.2368.1 NAM
4011000 gw1.9.2415.1 NAM
4021208 gw1.1.3523.1 NAM
4131323 gw1.10.14454.1 NAM
4132297 gw1.9.14809.1 NAM
4144054 gw1.7.15937.1 NAM
4153946 gw1.2.17072.1 NAM
4161810 gw1.2.18812.1 NAM
4162250 gw1.6.17578.1 NAM
4162421 gw1.3.19334.1 NAM
4747006 estExt_Genewise1.C_chr_21400 NAM
4756047 estExt_Genewise1.C_chr_42176 NAM
4758811 estExt_Genewise1.C_chr_50299 NAM
4763668 estExt_Genewise1.C_chr_71313 NAM
4768015 estExt_Genewise1.C_chr_96082 NAM
4770396 estExt_Genewise1.C_chr_102153 NAM
4771445 estExt_Genewise1.C_chr_107530 NAM
4772929 e_gw1.1.18685.1 NAM
4781101 e_gw1.1.19251.1 NAM
4800054 e_gw1.3.556.1 NAM
4806970 e_gw1.3.1194.1 NAM
4817544 e_gw1.4.17738.1 NAM
4817637 e_gw1.5.16477.1 NAM
4826732 e_gw1.6.600.1 NAM
4835057 e_gw1.7.17659.1 NAM
4849172 e_gw1.9.14992.1 NAM
4855627 e_gw1.9.4489.1 NAM
4857175 e_gw1.9.16599.1 NAM
4876084 estExt_Genewise1Plus.C_chr_29849 NAM
4876948 estExt_Genewise1Plus.C_chr_211200 NAM
4883719 estExt_Genewise1Plus.C_chr_47064 NAM
4887698 estExt_Genewise1Plus.C_chr_65303 NAM
4888615 estExt_Genewise1Plus.C_chr_66870 NAM
4889959 estExt_Genewise1Plus.C_chr_70286 NAM
4889974 estExt_Genewise1Plus.C_chr_70323 NAM
4891256 estExt_Genewise1Plus.C_chr_76988 NAM
4892479 estExt_Genewise1Plus.C_chr_81551 NAM
4896357 estExt_Genewise1Plus.C_chr_100384 NAM
4968956 fgenesh1_pg.C_chr_2000272 NAM
4969612 fgenesh1_pg.C_chr_2000928 NAM
4973857 fgenesh1_pg.C_chr_3000972 NAM
4975932 fgenesh1_pg.C_chr_3003047 NAM
4976143 fgenesh1_pg.C_chr_3003258 NAM
4979165 fgenesh1_pg.C_chr_4001998 NAM
4980904 fgenesh1_pg.C_chr_5000264 NAM
4988385 fgenesh1_pg.C_chr_8000158 NAM
4991742 fgenesh1_pg.C_chr_9001470 NAM
4992824 fgenesh1_pg.C_chr_10000001 NAM
4998165 estExt_fgenesh1_pg.C_chr_13740 NAM
4998167 estExt_fgenesh1_pg.C_chr_13743 NAM
5000036 estExt_fgenesh1_pg.C_chr_22304 NAM
5000207 estExt_fgenesh1_pg.C_chr_22630 NAM
5000372 estExt_fgenesh1_pg.C_chr_22915 NAM
5001645 estExt_fgenesh1_pg.C_chr_30970 NAM
5003181 estExt_fgenesh1_pg.C_chr_33918 NAM
5006368 estExt_fgenesh1_pg.C_chr_61176 NAM
5006651 estExt_fgenesh1_pg.C_chr_61674 NAM
5028087 Sb01g003775 NAM
5029188 Sb01g022100 NAM
5029877 Sb01g034410 NAM
5030689 Sb10g000460 NAM
5031163 Sb10g007890 NAM
5033760 Sb02g023960 NAM
5033795 Sb02g024593 NAM
5034084 Sb02g028870 NAM
5034298 Sb02g032670 NAM
5035436 Sb03g008470 NAM
5035486 Sb03g009320 NAM
5035487 Sb03g009330 NAM
5036418 Sb03g030997 NAM
5036419 Sb03g031000 NAM
5039189 Sb04g036340 NAM
5039694 Sb05g004880 NAM
5040061 Sb05g008290 NAM
5042059 Sb06g020103 NAM
5043766 Sb07g021400 NAM
5044635 Sb08g004860 NAM
5047863 Sb01g003710 NAM
5048029 Sb01g006410 NAM
5049027 Sb01g028450 NAM
5049162 Sb01g030760 NAM
5049909 Sb01g042570 NAM
5051393 Sb02g028750 NAM
5052264 Sb02g043210 NAM
5052896 Sb03g010130 NAM
5053493 Sb03g030750 NAM
5053907 Sb03g037940 NAM
5054158 Sb03g042210 NAM
5055556 Sb04g028015 NAM
5056093 Sb04g036640 NAM
5056437 Sb05g005450 NAM
5057883 Sb06g028800 NAM
5058207 Sb06g034010 NAM
5058243 Sb07g000470 NAM
5058431 Sb07g003900 NAM
5059271 Sb08g001940 NAM
5059521 Sb08g014060 NAM
5059799 Sb08g021080 NAM
5059865 Sb08g022560 NAM
5061772 Sb10g020860 NAM
5062313 Sb10g030770 NAM

General references

Olsen, AN; Ernst, HA; Leggio, LL; Skriver, K. 2005. NAC transcription factors: structurally distinct, functionally diverse. Trends Plant Sci. 10(2):79-87 PUBMEDID:15708345