Plant Transcription factor database - Universität Potsdam
version: 3.0

Carica papaya PHD Family

Description

Bienz. 2006: PHD proteins seem to be found universally in the nucleus, and their functions tend to lie in the control of chromatin or transcription. Increasing evidence indicates that PHD fingers bind to specific nuclear protein partners, for which they apparently use their loop 2 surface. Perhaps each PHD finger has its own cognate nuclear ligand, much like RING fingers have their cognate E2 ligases. No doubt the list of specific PHD finger ligands will grow, and the set of these ligands is likely to reveal whether PHD fingers have a common function in the nucleus.

Members of this family
  SHOULD possess PHD domain
  SHOULD NOT possess Alfin-like DDT Homeobox JmjC JmjN Myb_DNA-binding zf-CCCH domains

Domain alignments

This family is also present in:

References

There are 42 gene models in this family



Gene modelDescriptionDomains
evm.TU.supercontig_1162.1 PHD
evm.TU.supercontig_12.239 PHD
evm.TU.supercontig_127.13 Chromo DUF1086 DUF1087 Helicase_C PHD ResIII SNF2_N
evm.TU.supercontig_132.8 BAH PHD
evm.TU.supercontig_138.39 PHD
evm.TU.supercontig_139.75 PHD zf-MIZ
evm.TU.supercontig_142.23 PHD
evm.TU.supercontig_142.24 PHD
evm.TU.supercontig_150.24 PHD
evm.TU.supercontig_150.55 BAH PHD
evm.TU.supercontig_152.53 BAH PHD
evm.TU.supercontig_179.35 PHD
evm.TU.supercontig_18.20 BRCT PHD
evm.TU.supercontig_188.20 PHD
evm.TU.supercontig_2.110 PHD
evm.TU.supercontig_2.152 PHD
evm.TU.supercontig_2.412 Acetyltransf_1 Agenet PHD
evm.TU.supercontig_215.4 PHD
evm.TU.supercontig_215.6 FYRC FYRN PHD
evm.TU.supercontig_2744.1 PHD
evm.TU.supercontig_3.226 PHD
evm.TU.supercontig_3.76 PHD PWWP SET
evm.TU.supercontig_30.123 Chromo Helicase_C PHD SNF2_N
evm.TU.supercontig_3064.2 PHD
evm.TU.supercontig_32.124 PHD
evm.TU.supercontig_37.92 PHD
evm.TU.supercontig_42.113 PHD SET
evm.TU.supercontig_47.58 PHD
evm.TU.supercontig_49.46 PHD
evm.TU.supercontig_5.129 PHD
evm.TU.supercontig_50.131 FYRC FYRN PHD PWWP
evm.TU.supercontig_51.103 PHD
evm.TU.supercontig_58.105 PHD
evm.TU.supercontig_64.151 PHD
evm.TU.supercontig_74.23 PHD
evm.TU.supercontig_84.64 BAH PHD zf-C3HC4
evm.TU.supercontig_87.30 PHD
evm.TU.supercontig_87.7 PHD
evm.TU.supercontig_87.9 PHD
evm.TU.supercontig_89.18 PHD
evm.TU.supercontig_92.17 PHD
evm.TU.supercontig_96.10 PHD PWWP SET

General references

Bienz, M. 2006. The PHD finger, a nuclear protein-interaction domain. Trends Biochem. Sci. 31(1):35-40 PUBMEDID:16297627