Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica PHD Family

Description

Bienz. 2006: PHD proteins seem to be found universally in the nucleus, and their functions tend to lie in the control of chromatin or transcription. Increasing evidence indicates that PHD fingers bind to specific nuclear protein partners, for which they apparently use their loop 2 surface. Perhaps each PHD finger has its own cognate nuclear ligand, much like RING fingers have their cognate E2 ligases. No doubt the list of specific PHD finger ligands will grow, and the set of these ligands is likely to reveal whether PHD fingers have a common function in the nucleus.

Members of this family
  SHOULD possess PHD domain
  SHOULD NOT possess Alfin-like DDT Homeobox JmjC JmjN Myb_DNA-binding zf-CCCH domains

Domain alignments

This family is also present in:

References

There are 63 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g08820.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os01g11952.1 histone-lysine N-methyltransferase ATX5, putative, expressed PHD PWWP SET
LOC_Os01g11960.1 histone-lysine N-methyltransferase ATX5, putative, expressed PHD PWWP
LOC_Os01g11960.2 histone-lysine N-methyltransferase ATX5, putative, expressed PHD PWWP
LOC_Os01g65600.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os01g66070.1 PHD-finger domain containing protein, putative PHD
LOC_Os01g73460.1 ATXR, putative, expressed PHD SET
LOC_Os02g03030.1 ATXR, putative PHD SET
LOC_Os02g04490.1 histone acetyltransferase HAC1, putative, expressed DUF906 PHD ZZ zf-TAZ
LOC_Os02g09910.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os02g09920.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os02g48810.1 PHD-finger family protein, expressed PHD
LOC_Os02g52960.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os03g04980.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os03g15990.1 EDM2, putative PHD
LOC_Os03g19020.1 PHD-finger family protein, expressed PHD zf-C3HC4
LOC_Os03g19020.2 PHD-finger family protein, expressed PHD zf-C3HC4
LOC_Os03g19020.3 PHD-finger family protein, expressed PHD zf-C3HC4
LOC_Os03g19190.1 TOPBP1C - Similar to DNA replication protein TOPBP1 from, expressed BRCT PHD
LOC_Os03g50780.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os03g53630.1 PHD finger family protein, putative, expressed PHD
LOC_Os03g53700.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os03g58530.1 ES43 protein, putative, expressed BAH PHD
LOC_Os03g58530.2 ES43 protein, putative, expressed BAH PHD
LOC_Os04g34720.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os04g34720.2 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os04g35430.1 PHD-finger domain containing protein, expressed PHD
LOC_Os04g52020.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os04g59510.1 PHD finger family protein, putative, expressed Acetyltransf_1 PHD
LOC_Os05g03430.1 ATSIZ1/SIZ1, putative, expressed PHD SAP zf-MIZ
LOC_Os05g03430.2 ATSIZ1/SIZ1, putative, expressed PHD SAP zf-MIZ
LOC_Os05g03430.3 ATSIZ1/SIZ1, putative, expressed PHD zf-MIZ
LOC_Os06g01170.1 PHD-finger domain containing protein, expressed PHD
LOC_Os06g01320.1 chromo domain containing protein, expressed PHD SNF2_N
LOC_Os06g08790.1 ORC1 - Putative origin recognition complex subunit 1, expressed AAA BAH PHD
LOC_Os06g10690.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os06g10690.2 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os06g17280.1 PHD-finger family protein, expressed PHD
LOC_Os06g51450.1 PHD-finger domain containing protein, expressed PHD
LOC_Os06g51490.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os07g07690.1 PHD-finger domain containing protein, expressed PHD
LOC_Os07g07690.2 PHD-finger domain containing protein, expressed PHD
LOC_Os07g08880.1 ES43 protein, putative, expressed BAH PHD
LOC_Os07g08880.2 ES43 protein, putative, expressed BAH PHD
LOC_Os07g31450.1 CHR4/MI-2-LIKE, putative, expressed DUF1087 Helicase_C PHD SNF2_N
LOC_Os07g49030.1 PHD-finger family protein, expressed PHD
LOC_Os07g49030.2 PHD-finger family protein, expressed PHD
LOC_Os07g49290.1 PHD finger family protein, putative, expressed PHD
LOC_Os08g01420.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os08g32620.1 ES43 protein, putative, expressed BAH PHD
LOC_Os08g32620.3 ES43 protein, putative, expressed BAH PHD
LOC_Os08g32620.4 ES43 protein, putative, expressed BAH PHD
LOC_Os09g04890.1 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed FYRC FYRN PHD PWWP SET
LOC_Os09g21770.1 ES43 protein, putative, expressed BAH PHD
LOC_Os09g27620.1 PHD-finger domain containing protein, putative PHD
LOC_Os09g38440.1 ATXR, putative, expressed PHD SET
LOC_Os11g06130.1 PHD-finger family protein, expressed PHD
LOC_Os11g12650.1 PHD-finger domain containing protein, putative, expressed PHD
LOC_Os11g18770.1 PHD-finger family protein, expressed PHD
LOC_Os11g18770.2 PHD-finger family protein, expressed PHD
LOC_Os12g06480.2 PHD-finger family protein, expressed PHD
LOC_Os12g24540.1 PHD-finger family protein, expressed PHD
LOC_Os12g34330.1 protein binding protein, putative, expressed PHD zf-C3HC4

General references

Bienz, M. 2006. The PHD finger, a nuclear protein-interaction domain. Trends Biochem. Sci. 31(1):35-40 PUBMEDID:16297627