Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor PHD Family

Description

Bienz. 2006: PHD proteins seem to be found universally in the nucleus, and their functions tend to lie in the control of chromatin or transcription. Increasing evidence indicates that PHD fingers bind to specific nuclear protein partners, for which they apparently use their loop 2 surface. Perhaps each PHD finger has its own cognate nuclear ligand, much like RING fingers have their cognate E2 ligases. No doubt the list of specific PHD finger ligands will grow, and the set of these ligands is likely to reveal whether PHD fingers have a common function in the nucleus.

Members of this family
  SHOULD possess PHD domain
  SHOULD NOT possess Alfin-like DDT Homeobox JmjC JmjN Myb_DNA-binding zf-CCCH domains

Domain alignments

This family is also present in:

References

There are 55 gene models in this family



Gene modelDescriptionDomains
126674 fgenesh1_pm.C_chr_3001705 PHD SET
149331 estExt_fgenesh1_kg.C_chr_70121 BAH PHD
4001288 gw1.3.1494.1 PHD
4120693 gw1.9.13728.1 PHD
4120705 gw1.9.13730.1 PHD
4121354 gw1.9.13779.1 PHD
4167011 gw1.2.20659.1 PHD
4747853 estExt_Genewise1.C_chr_27042 BAH PHD
4752761 estExt_Genewise1.C_chr_37890 PHD PWWP SET
4754217 estExt_Genewise1.C_chr_310299 PHD
4755160 estExt_Genewise1.C_chr_40353 PHD SET
4759291 estExt_Genewise1.C_chr_51871 PHD
4769950 estExt_Genewise1.C_chr_101133 AAA BAH PHD
4789006 e_gw1.2.9563.1 FYRC FYRN PHD PWWP SET
4790976 e_gw1.2.16487.1 PHD
4818220 e_gw1.5.16343.1 PHD SET
4826058 e_gw1.6.17411.1 PHD
4839329 e_gw1.7.1745.1 PHD
4839598 e_gw1.7.572.1 PHD
4863355 e_gw1.10.140.1 PHD
4867905 estExt_Genewise1Plus.C_chr_11675 PHD
4872469 estExt_Genewise1Plus.C_chr_111729 PHD
4872687 estExt_Genewise1Plus.C_chr_112056 PHD
4873363 estExt_Genewise1Plus.C_chr_20751 PHD
4873453 estExt_Genewise1Plus.C_chr_20935 BAH PHD
4877013 estExt_Genewise1Plus.C_chr_211302 BRCT PHD
4888958 estExt_Genewise1Plus.C_chr_67509 PHD
4893760 estExt_Genewise1Plus.C_chr_90529 PHD SAP zf-MIZ
4977111 fgenesh1_pg.C_chr_3004226 Acetyltransf_1 PHD
4988673 fgenesh1_pg.C_chr_8000446 PHD
4990794 fgenesh1_pg.C_chr_9000522 PHD
4992926 fgenesh1_pg.C_chr_10000103 PHD
4994106 fgenesh1_pg.C_chr_10001283 PHD
4996825 estExt_fgenesh1_pg.C_chr_11048 PHD
5001210 estExt_fgenesh1_pg.C_chr_30160 PHD PWWP SET
5002992 estExt_fgenesh1_pg.C_chr_33606 PHD
5003380 estExt_fgenesh1_pg.C_chr_40018 PHD
5003529 estExt_fgenesh1_pg.C_chr_40292 PHD zf-C3HC4
5003728 estExt_fgenesh1_pg.C_chr_40681 FYRC FYRN PHD
5007312 estExt_fgenesh1_pg.C_chr_70040 PHD
5007318 estExt_fgenesh1_pg.C_chr_70051 PHD
5008729 estExt_fgenesh1_pg.C_chr_81214 PHD
5010841 estExt_fgenesh1_pg.C_chr_101124 PHD
5011279 estExt_fgenesh1_pg.C_chr_102240 PHD
5030048 Sb01g037640 PHD
5030085 Sb01g038485 Acetyltransf_1 Agenet PHD
5033275 Sb02g012355 PHD zf-C3HC4
5037722 Sb04g006230 PHD
5041850 Sb06g017030 PHD
5046413 Sb09g018370 PHD
5048148 Sb01g008195 PHD
5053190 Sb03g025310 PHD zf-C2HC_plant
5055957 Sb04g034380 PHD
5061767 Sb10g020580 PHD zf-UBR
5062353 Sb10g031300 PHD

General references

Bienz, M. 2006. The PHD finger, a nuclear protein-interaction domain. Trends Biochem. Sci. 31(1):35-40 PUBMEDID:16297627