Plant Transcription factor database - Universität Potsdam
version: 3.0

Vitis vinifera PHD Family

Description

Bienz. 2006: PHD proteins seem to be found universally in the nucleus, and their functions tend to lie in the control of chromatin or transcription. Increasing evidence indicates that PHD fingers bind to specific nuclear protein partners, for which they apparently use their loop 2 surface. Perhaps each PHD finger has its own cognate nuclear ligand, much like RING fingers have their cognate E2 ligases. No doubt the list of specific PHD finger ligands will grow, and the set of these ligands is likely to reveal whether PHD fingers have a common function in the nucleus.

Members of this family
  SHOULD possess PHD domain
  SHOULD NOT possess Alfin-like DDT Homeobox JmjC JmjN Myb_DNA-binding zf-CCCH domains

Domain alignments

This family is also present in:

References

There are 44 gene models in this family



Gene modelDescriptionDomains
GSVIVP00000413001 PHD
GSVIVP00000498001 PHD
GSVIVP00000570001 PHD
GSVIVP00002115001 PHD
GSVIVP00003645001 PHD
GSVIVP00005671001 FYRC FYRN PHD PWWP SET
GSVIVP00006203001 PHD YDG_SRA zf-C3HC4
GSVIVP00006733001 PHD
GSVIVP00007716001 PHD
GSVIVP00008057001 PHD
GSVIVP00009252001 PHD
GSVIVP00011920001 PHD
GSVIVP00013965001 PHD
GSVIVP00015314001 PHD
GSVIVP00015464001 PHD
GSVIVP00015769001 PHD
GSVIVP00017553001 PHD
GSVIVP00019987001 PHD
GSVIVP00020436001 PHD
GSVIVP00020759001 FYRC FYRN MBD PHD
GSVIVP00022136001 PHD
GSVIVP00022137001 PHD
GSVIVP00022656001 PHD zf-C3HC4
GSVIVP00023051001 PHD
GSVIVP00023735001 AT_hook PHD
GSVIVP00024076001 Acetyltransf_1 PHD
GSVIVP00024077001 Acetyltransf_1 PHD
GSVIVP00024500001 PHD SAP zf-MIZ
GSVIVP00024619001 AAA BAH PHD
GSVIVP00025484001 PHD
GSVIVP00027049001 PHD PWWP SET
GSVIVP00027251001 PHD
GSVIVP00027799001 Acetyltransf_1 PHD
GSVIVP00027927001 PHD
GSVIVP00028092001 BRCT PHD
GSVIVP00028835001 FYRC PHD
GSVIVP00029471001 Helicase_C PHD SNF2_N zf-C3HC4
GSVIVP00030136001 Chromo Helicase_C PHD SNF2_N
GSVIVP00030655001 PHD
GSVIVP00032703001 Chromo Helicase_C PHD ResIII SNF2_N
GSVIVP00032930001 PHD
GSVIVP00034847001 PHD SET
GSVIVP00037113001 PHD PWWP SET
GSVIVP00037225001 PHD SET

General references

Bienz, M. 2006. The PHD finger, a nuclear protein-interaction domain. Trends Biochem. Sci. 31(1):35-40 PUBMEDID:16297627