Plant Transcription factor database - Universität Potsdam
version: 3.0

Zea mays PHD Family

Description

Bienz. 2006: PHD proteins seem to be found universally in the nucleus, and their functions tend to lie in the control of chromatin or transcription. Increasing evidence indicates that PHD fingers bind to specific nuclear protein partners, for which they apparently use their loop 2 surface. Perhaps each PHD finger has its own cognate nuclear ligand, much like RING fingers have their cognate E2 ligases. No doubt the list of specific PHD finger ligands will grow, and the set of these ligands is likely to reveal whether PHD fingers have a common function in the nucleus.

Members of this family
  SHOULD possess PHD domain
  SHOULD NOT possess Alfin-like DDT Homeobox JmjC JmjN Myb_DNA-binding zf-CCCH domains

Domain alignments

This family is also present in:

References

There are 91 gene models in this family



Gene modelDescriptionDomains
AC208440.2_FGP043 PHD
GRMZM2G006032_P01 PHD SET
GRMZM2G009552_P01 PHD
GRMZM2G011434_P01 PHD
GRMZM2G011434_P02 PHD
GRMZM2G011648_P01 PHD
GRMZM2G011648_P02 PHD
GRMZM2G013794_P01 FYRC FYRN PHD PWWP
GRMZM2G013794_P02 FYRC PHD
GRMZM2G022945_P01 BRCT PHD
GRMZM2G025703_P02 PHD
GRMZM2G025703_P03 PHD
GRMZM2G031075_P01 PHD
GRMZM2G032604_P01 FYRC FYRN PHD
GRMZM2G032748_P01 PHD
GRMZM2G036160_P01 PHD
GRMZM2G038050_P01 PHD
GRMZM2G038050_P02 PHD
GRMZM2G039895_P01 PHD
GRMZM2G045544_P01 PHD
GRMZM2G045544_P02 PHD
GRMZM2G050495_P01 PHD
GRMZM2G050495_P02 PHD
GRMZM2G057070_P01 PHD
GRMZM2G059266_P01 PHD
GRMZM2G062376_P03 PHD
GRMZM2G062831_P01 PHD
GRMZM2G065364_P01 PHD zf-C3HC4
GRMZM2G067876_P01 PHD
GRMZM2G067876_P02 PHD
GRMZM2G067876_P04 PHD
GRMZM2G068331_P01 PHD
GRMZM2G068331_P02 PHD
GRMZM2G071613_P01 PHD
GRMZM2G071613_P02 PHD
GRMZM2G073581_P01 PHD
GRMZM2G076965_P01 PHD
GRMZM2G079349_P01 Acetyltransf_1 Agenet PHD
GRMZM2G081350_P01 PHD zf-C3HC4
GRMZM2G084202_P01 FYRC FYRN PHD
GRMZM2G084296_P01 PHD
GRMZM2G084665_P01 PHD SAP
GRMZM2G085266_P01 PHD PWWP SET
GRMZM2G087482_P01 PHD
GRMZM2G091103_P01 PHD zf-C3HC4
GRMZM2G091103_P02 PHD zf-C3HC4
GRMZM2G091265_P01 BAH PHD
GRMZM2G091265_P05 BAH PHD
GRMZM2G097726_P02 BAH PHD
GRMZM2G099216_P02 BAH PHD
GRMZM2G099216_P03 BAH PHD
GRMZM2G102098_P01 PHD
GRMZM2G102098_P02 PHD
GRMZM2G103230_P01 PHD
GRMZM2G108288_P02 BAH PHD
GRMZM2G108288_P03 BAH PHD
GRMZM2G108288_P04 BAH PHD
GRMZM2G108867_P01 PHD
GRMZM2G119357_P01 BAH PHD
GRMZM2G119442_P01 PHD
GRMZM2G119442_P02 PHD
GRMZM2G138579_P01 BAH PHD
GRMZM2G138579_P02 BAH PHD
GRMZM2G142197_P01 PHD PRONE
GRMZM2G143042_P01 PHD
GRMZM2G143042_P02 PHD
GRMZM2G150786_P01 PHD
GRMZM2G151875_P01 AAA BAH PHD
GRMZM2G155123_P01 PHD SAP
GRMZM2G155123_P02 PHD SAP zf-MIZ
GRMZM2G155123_P03 PHD SAP zf-MIZ
GRMZM2G156104_P01 PHD
GRMZM2G158194_P01 PHD
GRMZM2G161479_P01 PHD
GRMZM2G161479_P02 PHD
GRMZM2G162368_P01 PHD
GRMZM2G162368_P02 PHD
GRMZM2G165452_P01 PHD PLU-1 zf-C5HC2
GRMZM2G165452_P03 PHD
GRMZM2G165452_P04 PHD
GRMZM2G168249_P01 AAA BAH PHD
GRMZM2G168249_P02 BAH PHD
GRMZM2G170412_P01 PHD PWWP
GRMZM2G172440_P02 PHD
GRMZM2G172440_P03 PHD
GRMZM2G173852_P01 PHD
GRMZM2G173852_P02 PHD
GRMZM2G174266_P02 PHD SNF2_N
GRMZM2G177087_P01 PHD
GRMZM2G178072_P01 PHD
GRMZM2G178072_P02 PHD

General references

Bienz, M. 2006. The PHD finger, a nuclear protein-interaction domain. Trends Biochem. Sci. 31(1):35-40 PUBMEDID:16297627