Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. indica SET Family

Description

Marmorstein. 2003: The methylation of lysine residues on histone tails is catalyzed by proteins containing a conserved SET domain. A recent flurry of structures of SET domain proteins has revealed a new protein fold and a scaffold for understanding catalysis and substrate binding by these enzymes. The prospect that histone methylation might form an epigenetic code and the implicated involvement of SET domain proteins in cancer assures that structure-function studies of these enzymes will continue until their detailed mechanism of action is determined.

Members of this family
  SHOULD possess SET domain
  SHOULD NOT possess CXC PHD zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 31 gene models in this family



Gene modelDescriptionDomains
OsIBCD000751 Chr01_1126,4968,,,1,4968, ABC_membrane_2 ABC_tran PWWP SET SbmA_BacA
OsIBCD003447 Chr01_5336,1017,,,1,1017, Pre-SET SET
OsIBCD004062 Chr01_6259,1431,,,1,1431, SET
OsIBCD004366 Chr01_6672,1626,,,1,1626, Pre-SET SET YDG_SRA
OsIBCD006837 Chr02_3452,5691,,,1,5691, SET
OsIBCD007250 Chr02_4060,2316,,,1,2316, SET
OsIBCD007721 Chr02_4774,4995,,,1,4995, Pre-SET SET
OsIBCD007823 Chr02_4912,1509,,,1,1509, Rubis-subs-bind SET
OsIBCD009878 Chr03_1871,1962,,,1,1962, SET
OsIBCD014349 Chr04_2830,1998,,,1,1998, SET
OsIBCD015146 Chr04_3952,2466,,,1,2466, Pre-SET SET YDG_SRA
OsIBCD016123 Chr04_5323,2466,,,1,2466, Pre-SET SET
OsIBCD019043 Chr05_4731,1506,,,1,1506, SET
OsIBCD019262 Chr06_273,3114,,,1,3114, Pkinase SET
OsIBCD020136 Chr06_1585,3273,,,1,3273, SET
OsIBCD025171 Chr08_713,6651,,,1,6651, SET
OsIBCD026667 Chr08_3391,1383,,,1,1383, SET
OsIBCD027445 Chr08_4578,1701,,,1,1701, Pre-SET SET YDG_SRA
OsIBCD027654 Chr09_366,2457,,,1,2457, FYRC PWWP SET
OsIBCD028001 Chr09_1091,705,,,1,705, SET
OsIBCD028264 Chr09_1524,3603,,,1,3603, Pre-SET SET YDG_SRA
OsIBCD028528 Chr09_1948,1908,,,1,1908, Rotamase Rubis-subs-bind SET
OsIBCD033946 Chr12_293,2292,,,1,2292, Pre-SET SET YDG_SRA zf-Tim10_DDP
OsIBCD034475 Chr12_1117,1518,,,1,1518, Rubis-subs-bind SET
OsIBCD035652 Chr12_3149,3504,,,1,3504, SET
OsIBCD036953 Chr01_5653,2211,,,1,2211, Pre-SET SET YDG_SRA
OsIBCD041334 Chr05_3867,2019,,,1,2019, Pre-SET SET YDG_SRA
OsIBCD042941 Chr07_2007,2055,,,1,2055, Pre-SET SET YDG_SRA
OsIBCD043903 Chr08_3014,3516,,,1,3516, Pre-SET SET YDG_SRA
OsIBCD045648 Chr11_211,1995,,,1,1995, Pre-SET SET YDG_SRA
OsIBCD046176 Chr11_2920,2439,,,1,2439, AT_hook Pre-SET SET YDG_SRA

General references

Marmorstein, R. 2003. Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem. Sci. 28(2):59-62 PUBMEDID:12575990