Plant Transcription factor database - Universität Potsdam
version: 3.0

Oryza sativa subsp. japonica SET Family

Description

Marmorstein. 2003: The methylation of lysine residues on histone tails is catalyzed by proteins containing a conserved SET domain. A recent flurry of structures of SET domain proteins has revealed a new protein fold and a scaffold for understanding catalysis and substrate binding by these enzymes. The prospect that histone methylation might form an epigenetic code and the implicated involvement of SET domain proteins in cancer assures that structure-function studies of these enzymes will continue until their detailed mechanism of action is determined.

Members of this family
  SHOULD possess SET domain
  SHOULD NOT possess CXC PHD zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 36 gene models in this family



Gene modelDescriptionDomains
LOC_Os01g46700.1 SET domain containing protein, expressed SET
LOC_Os01g59620.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed Pre-SET SET YDG_SRA
LOC_Os01g65730.1 SET domain containing protein, expressed SET
LOC_Os01g70220.1 histone-lysine N-methyltransferase, putative, expressed Pre-SET SET YDG_SRA
LOC_Os02g34850.1 histone-lysine N-methyltransferase ASHH2, putative, expressed SET zf-CW
LOC_Os02g39800.1 SET domain containing protein SET
LOC_Os02g40770.1 SET domain containing protein, expressed SET WIYLD
LOC_Os02g40770.2 SET domain containing protein, expressed SET WIYLD
LOC_Os02g47900.1 SET domain protein SDG117, putative, expressed Pre-SET SET
LOC_Os02g49326.1 SET domain-containing protein, putative, expressed Rubis-subs-bind SET
LOC_Os02g50100.1 SET domain-containing protein, putative, expressed Rubis-subs-bind SET
LOC_Os03g19480.1 SET domain containing protein, expressed SET
LOC_Os04g34976.1 SET domain containing protein, expressed SET
LOC_Os04g34976.2 SET domain containing protein, expressed SET
LOC_Os04g45990.1 histone-lysine N-methyltransferase, putative, expressed Pre-SET SET YDG_SRA
LOC_Os05g41172.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed Pre-SET SET YDG_SRA
LOC_Os05g41172.2 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed Pre-SET SET YDG_SRA
LOC_Os05g50980.1 SET domain containing protein, expressed SET
LOC_Os06g03676.1 CAMK_CAMK_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed SET
LOC_Os06g16390.1 SET domain containing protein, expressed SET
LOC_Os07g25450.1 histone-lysine N-methyltransferase, putative, expressed Pre-SET SET YDG_SRA
LOC_Os07g28840.1 SET domain containing protein, expressed SET
LOC_Os08g08210.1 SET domain containing protein, expressed SET
LOC_Os08g14660.1 SET domain containing protein, expressed SET
LOC_Os08g30910.1 YDG/SRA domain containing protein, expressed Pre-SET SET YDG_SRA
LOC_Os08g34370.1 SET domain containing protein SET
LOC_Os08g45130.1 histone-lysine N-methyltransferase, putative, expressed Pre-SET SET YDG_SRA
LOC_Os09g13740.1 SET domain containing protein, expressed SET
LOC_Os09g13740.2 SET domain containing protein, expressed SET
LOC_Os09g19830.1 histone-lysine N-methyltransferase, putative, expressed Pre-SET SET YDG_SRA
LOC_Os09g24530.1 ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed Rubis-subs-bind SET
LOC_Os11g03700.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative Pre-SET SET YDG_SRA
LOC_Os11g38900.1 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed AT_hook Pre-SET SET YDG_SRA
LOC_Os12g03460.1 mitochondrial import inner membrane translocase subunit Tim, putative Pre-SET SET YDG_SRA zf-Tim10_DDP
LOC_Os12g13460.1 SET domain-containing protein, putative, expressed Rubis-subs-bind SET
LOC_Os12g41900.1 SET domain containing protein, expressed SET

General references

Marmorstein, R. 2003. Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem. Sci. 28(2):59-62 PUBMEDID:12575990