Plant Transcription factor database - Universität Potsdam
version: 3.0

Populus trichocarpa SET Family

Description

Marmorstein. 2003: The methylation of lysine residues on histone tails is catalyzed by proteins containing a conserved SET domain. A recent flurry of structures of SET domain proteins has revealed a new protein fold and a scaffold for understanding catalysis and substrate binding by these enzymes. The prospect that histone methylation might form an epigenetic code and the implicated involvement of SET domain proteins in cancer assures that structure-function studies of these enzymes will continue until their detailed mechanism of action is determined.

Members of this family
  SHOULD possess SET domain
  SHOULD NOT possess CXC PHD zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 44 gene models in this family



Gene modelDescriptionDomains
196203 gw1.IV.1292.1 SET
198679 gw1.IV.3768.1 SET
199501 gw1.IV.4590.1 SET
200604 gw1.IX.1069.1 Pre-SET SET
204626 gw1.V.27.1 SET zf-CW
206955 gw1.V.2356.1 SET
208346 gw1.V.3747.1 SET
226314 gw1.X.1011.1 Rubis-subs-bind SET
229952 gw1.X.4649.1 Pre-SET SET YDG_SRA
241475 gw1.XIII.1724.1 Pre-SET SET
241918 gw1.XIII.2167.1 Pre-SET SET
243333 gw1.XIV.76.1 Pre-SET SET
244302 gw1.XIV.1045.1 SET
255095 gw1.XVI.1034.1 Pre-SET SET YDG_SRA
261219 gw1.XVIII.1760.1 SET
262550 gw1.XVIII.3091.1 SET
264791 gw1.118.279.1 Pre-SET SET YDG_SRA
408880 gw1.II.215.1 Pre-SET SET
409038 gw1.II.373.1 Pre-SET SET YDG_SRA
409555 gw1.II.890.1 SET
413250 gw1.III.353.1 Pre-SET SET YDG_SRA
415725 gw1.VI.98.1 Pre-SET SET YDG_SRA
419224 gw1.VIII.652.1 Pre-SET SET YDG_SRA
421131 gw1.VIII.2559.1 Rubis-subs-bind SET
551417 eugene3.00020732 SET
553315 eugene3.00002630 SET
562064 eugene3.00070002 SET
572862 eugene3.00140907 SET
573120 eugene3.00141165 Rubis-subs-bind SET
580469 eugene3.01210008 SET
585029 eugene3.01700004 SET
585260 eugene3.01730002 Rubis-subs-bind SET
590678 eugene3.32850001 Pre-SET SET YDG_SRA
594422 eugene3.00640010 SET
708413 estExt_Genewise1_v1.C_LG_I6844 Pre-SET SET YDG_SRA
719252 estExt_Genewise1_v1.C_LG_VII2923 SET
719406 estExt_Genewise1_v1.C_LG_VII3275 SET
731686 estExt_Genewise1_v1.C_LG_XIV2284 SET
753829 fgenesh4_pg.C_LG_II000009 GYF SET
758229 fgenesh4_pg.C_LG_III001771 Pre-SET SET YDG_SRA
763921 fgenesh4_pg.C_LG_VII000266 SET
766181 fgenesh4_pg.C_LG_VIII001195 Rubis-subs-bind SET
801345 fgenesh4_pm.C_LG_V000437 SET
818400 estExt_fgenesh4_pg.C_LG_V0535 SET

General references

Marmorstein, R. 2003. Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem. Sci. 28(2):59-62 PUBMEDID:12575990