Plant Transcription factor database - Universität Potsdam
version: 3.0

Sorghum bicolor SET Family

Description

Marmorstein. 2003: The methylation of lysine residues on histone tails is catalyzed by proteins containing a conserved SET domain. A recent flurry of structures of SET domain proteins has revealed a new protein fold and a scaffold for understanding catalysis and substrate binding by these enzymes. The prospect that histone methylation might form an epigenetic code and the implicated involvement of SET domain proteins in cancer assures that structure-function studies of these enzymes will continue until their detailed mechanism of action is determined.

Members of this family
  SHOULD possess SET domain
  SHOULD NOT possess CXC PHD zf-C2H2 domains

Domain alignments

This family is also present in:

References

There are 40 gene models in this family



Gene modelDescriptionDomains
143658 estExt_fgenesh1_pm.C_chr_31144 Pre-SET SET
3987101 gw1.8.226.1 Pre-SET SET YDG_SRA
4744527 estExt_Genewise1.C_chr_19587 SET
4748868 estExt_Genewise1.C_chr_28920 SET
4748908 estExt_Genewise1.C_chr_28999 SET
4753708 estExt_Genewise1.C_chr_39466 Pre-SET SET YDG_SRA
4760357 estExt_Genewise1.C_chr_60316 AT_hook Pre-SET SET YDG_SRA
4761727 estExt_Genewise1.C_chr_66656 Pre-SET SET YDG_SRA
4763578 estExt_Genewise1.C_chr_71139 SET
4763840 estExt_Genewise1.C_chr_71947 SET
4767817 estExt_Genewise1.C_chr_95641 Pre-SET SET YDG_SRA
4769185 estExt_Genewise1.C_chr_98029 SET
4769441 estExt_Genewise1.C_chr_100275 SET
4789504 e_gw1.2.3943.1 Pre-SET SET YDG_SRA
4834595 e_gw1.7.14425.1 Pre-SET SET YDG_SRA
4838810 e_gw1.7.16352.1 Pre-SET SET YDG_SRA
4839030 e_gw1.7.14413.1 Pre-SET SET YDG_SRA
4873608 estExt_Genewise1Plus.C_chr_21376 Pre-SET SET YDG_SRA
4874383 estExt_Genewise1Plus.C_chr_26815 Pre-SET SET YDG_SRA
4881238 estExt_Genewise1Plus.C_chr_310826 Pre-SET SET YDG_SRA
4884239 estExt_Genewise1Plus.C_chr_47956 Pre-SET SET
4896633 estExt_Genewise1Plus.C_chr_100853 SET
4976530 fgenesh1_pg.C_chr_3003645 SET
4980068 fgenesh1_pg.C_chr_4002901 Pre-SET SET YDG_SRA
4987400 fgenesh1_pg.C_chr_7001490 SET
5004164 estExt_fgenesh1_pg.C_chr_41730 SET
5004374 estExt_fgenesh1_pg.C_chr_42130 SET WIYLD
5036310 Sb03g029140 Rubis-subs-bind SET
5038622 Sb04g025725 SET
5041002 Sb05g026050 SET
5043634 Sb07g019863 Pre-SET SET YDG_SRA
5044461 Sb08g002530 SET
5051031 Sb02g020844 SET
5051168 Sb02g024510 Rubis-subs-bind SET
5055610 Sb04g028760 Rubis-subs-bind SET
5055646 Sb04g029430 Rubis-subs-bind SET
5057200 Sb06g016720 SET
5058210 Sb06g034060 Pre-SET SET WIYLD
5058868 Sb07g023480 Pre-SET SET WIYLD
5060718 Sb09g024010 Pre-SET SET YDG_SRA

General references

Marmorstein, R. 2003. Structure of SET domain proteins: a new twist on histone methylation. Trends Biochem. Sci. 28(2):59-62 PUBMEDID:12575990