SNF2 Family

Description

Eisen et al. 1995: The SNF2 family of proteins includes representatives from a variety of species with roles in cellular processes such as transcriptional regulation (e.g. MOT1, SNF2 and BRM), maintenance of chromosome stability during mitosis (e.g. lodestar) and various aspects of processing of DNA damage, including nucleotide excision repair (e.g. RAD16 and ERCC6), recombinational pathways (e.g. RAD54) and post-replication daughter strand gap repair (e.g. RAD5). This family also includes many proteins with no known function. To better characterize this family of proteins we have used molecular phylogenetic techniques to infer evolutionary relationships among the family members. We have divided the SNF2 family into multiple subfamilies, each of which represents what we propose to be a functionally and evolutionarily distinct group. We have then used the subfamily structure to predict the functions of some of the uncharacterized proteins in the SNF2 family. We discuss possible implications of this evolutionary analysis on the general properties and evolution of the SNF2 family.

Domain alignments

This family is also present in:

• Cyanidioschyzon merolae
• Galdieria sulphuraria
• Micromonas pusilla CCMP1545
• Micromonas sp. RCC299
• Ostreococcus lucimarinus
• Ostreococcus tauri
• Chlamydomonas reinhardtii
• Chlorella sp. NC64A
• Coccomyxa sp. C-169
• Physcomitrella patens
• Selaginella moellendorffii
• Oryza sativa subsp. indica
• Oryza sativa subsp. japonica
• Sorghum bicolor
• Zea mays
• Arabidopsis lyrata
• Arabidopsis thaliana
• Carica papaya
• Populus trichocarpa
• Vitis vinifera

References